DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and Drgx

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:XP_006518472.1 Gene:Drgx / 107751 MGIID:2148204 Length:354 Species:Mus musculus


Alignment Length:271 Identity:82/271 - (30%)
Similarity:108/271 - (39%) Gaps:71/271 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 RPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSG 294
            |.||||.    ..:....|||...:|                ..:.|.:|....|..|....:..
Mouse    45 RVQRVPP----KPIRRRQLAALCQAG----------------ATHRHKSARPLPALVQPSGPIRP 89

  Fly   295 AAAGLSGHGHHPHHPHGHPHHPHL-GAHHHGQHHLSHLGHGPPPKRKRRHRTIFTEEQLEQLEAT 358
            :|.      .:.|.|      |.| |....|.|.......|...:::||:||.||.:|||.|||.
Mouse    90 SAM------FYFHCP------PQLEGTAPFGNHSTGDFDDGFLRRKQRRNRTTFTLQQLEALEAV 142

  Fly   359 FDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKR--EEQE-------------RLRK 408
            |.:||||||..||:||:|::|.|.||:|||:||||||||.:|  .:||             .:|.
Mouse   143 FAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRN 207

  Fly   409 LQEEQCGSTTNG-----TTNSSSGTTSSTGNGSLTVKC-PG----SDHYSAQLVHIKS------- 456
            :.....|..|..     ....|.|.|... .|.....| ||    :..|:..|.|:.|       
Mouse   208 INSPPPGDQTRSKKEALEAQQSLGRTVGP-TGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLC 271

  Fly   457 -----DPNGYS 462
                 ||.|.|
Mouse   272 SCCVPDPMGLS 282

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 37/55 (67%)
DrgxXP_006518472.1 Homeodomain 125..181 CDD:459649 37/55 (67%)
OAR 292..309 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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