DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gsc and prrx1

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:XP_004913839.1 Gene:prrx1 / 100494324 XenbaseID:XB-GENE-484663 Length:248 Species:Xenopus tropicalis


Alignment Length:171 Identity:56/171 - (32%)
Similarity:76/171 - (44%) Gaps:43/171 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 GHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAA------------- 297
            |.|.:...|...|| .|.|.|..||        :|:|:...:....:.||.|             
 Frog    14 GPLGSRLESPITAS-LDNLQAKKNF--------SVSHLLDLEEAGEMVGAQAEDGSGEAGRSLLE 69

  Fly   298 --GLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLGHGPPPKRK-RRHRTIFTEEQLEQLEATF 359
              ||:.....|                  |.....:......||| ||:||.|...||:.||..|
 Frog    70 SPGLTSGSDTP------------------QQENEQMNAEQKKKRKQRRNRTTFNSSQLQALERVF 116

  Fly   360 DKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKR 400
            ::|||||..:||.||.:|:|.|.||:|||:|||||:|:.:|
 Frog   117 ERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNER 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 32/55 (58%)
prrx1XP_004913839.1 Homeodomain 102..154 CDD:459649 29/51 (57%)
OAR 221..238 CDD:461067
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.