DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and nobox

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:XP_031761569.1 Gene:nobox / 100494031 XenbaseID:XB-GENE-22068768 Length:652 Species:Xenopus tropicalis


Alignment Length:508 Identity:100/508 - (19%)
Similarity:164/508 - (32%) Gaps:161/508 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 GGGGGGTTTTTPSTTPDIPPSKAKFKITVVSTPSPSPPPTP-PPAGSMLAQMVETNSPPAGYTLK 72
            |.|...|.......:..:|.|....:..|.|..|.|....| .|..|.|.......:.|||...:
 Frog    11 GNGFVATGNALRVGSDPLPDSDGSLQSLVSSADSSSTLIAPIRPCRSRLTSTCGAANGPAGNRGE 75

  Fly    73 RSPSDLGEQQQPPRQISRSPGNTAAYHLTTAMLLNSQQCGYLGQRLQSVLQQQHAQHQQSQSQTP 137
            ..|:                                        :.:..::.:..:..:.:.|..
 Frog    76 TGPA----------------------------------------QAEKWIRNRRQREDEKRCQLG 100

  Fly   138 SSDDGSQSGVTILEEERRGGAAAASLFTI-----DSILGSRQQGGGTAPSQGSHISSNGNQNGLT 197
            |.|: .::.:..||.|..||........:     :.::.|..:..|..||.|  .:|.|.|..|:
 Frog   101 SPDE-EETSLRCLEPEAGGGPQDEYRAVLINEGGNGLVASDPREFGINPSGG--CASEGGQCQLS 162

  Fly   198 SNGISLGLKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSD 262
            ...:...|..:.....::.:.:........|.|.|..|..|:..|                    
 Frog   163 LLAVCGPLPEATGGCYSAFSGDDPQGPGYFPPRGQFQPVNLKVEG-------------------- 207

  Fly   263 FLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHH---PHGHPHHPHLGAHHHG 324
               .:|...|....:|..|  |:.::...:..     :|||.....   |...|..|        
 Frog   208 ---NFPQSAPLPRRSARCA--ASCRLPTFIYD-----TGHGGDRQRGKCPADAPEEP-------- 254

  Fly   325 QHHLSHLGHGPPPKRKRRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFK 389
                     |||.::|  .||:::.:||::||..|.:.||||...|.::|..:.:..:|:.|||:
 Frog   255 ---------GPPCRKK--SRTLYSMDQLQELERLFAEDHYPDSEKRREIAEIIGVTPQRIMVWFQ 308

  Fly   390 NRRAKWRKQKREEQERLRK----------------------LQEEQC------------------ 414
            ||||||||.::...:..||                      |...:.                  
 Frog   309 NRRAKWRKVEKTSIKGPRKPLSAAGMSRPETAVLTVSSSVALSRPEAVSLSVTSGFHTYGSAFPP 373

  Fly   415 -GSTTNG----------TTNSSSG--------TTSSTGNGSLTVKC-PGSDHY 447
             |...||          |:.||.|        ::||:|.||.:..| |.|..|
 Frog   374 VGGVRNGFSMVPGSALPTSQSSDGSSQHSASCSSSSSGLGSPSEVCLPPSQEY 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 23/55 (42%)
noboxXP_031761569.1 Homeodomain 260..316 CDD:459649 24/57 (42%)

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