DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gsc and vsx2

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:XP_004917101.1 Gene:vsx2 / 100493176 XenbaseID:XB-GENE-853775 Length:377 Species:Xenopus tropicalis


Alignment Length:272 Identity:69/272 - (25%)
Similarity:100/272 - (36%) Gaps:116/272 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 FTIDSILGSRQQGGGTAPSQ--------GSHISSNGNQNGL----------TSNGISLG------ 204
            |.|..|||..::  ...|||        |:|:.:..:..||          |..|:.||      
 Frog    16 FGIQEILGLNKE--PPTPSQRHLHPLSPGTHLLAARSGLGLLAAGGIPTFYTQPGLLLGDPPGPR 78

  Fly   205 LKRSGAESPASPNSNSSSSAAASPIRPQRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPN 269
            ::::|.|..:...|:.|...::|   .:::|..|                    |.|.......:
 Frog    79 IQQTGQEEGSRTCSSDSEDVSSS---DRKLPKSL--------------------SQSKKRKKRRH 120

  Fly   270 FYPNYMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSHLGHG 334
            .|||.|.                                                        .|
 Frog   121 RYPNIMF--------------------------------------------------------EG 129

  Fly   335 PPPKRK-----------RRHRTIFTEEQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWF 388
            ..||.|           |..|||||..|||:||..|::.|||||..||.||:|.:|.|:|::|||
 Frog   130 NRPKIKFGVFTGNKGAIRSFRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWF 194

  Fly   389 KNRRAKWRKQKR 400
            :||||||||:::
 Frog   195 QNRRAKWRKREK 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 34/55 (62%)
vsx2XP_004917101.1 Homeodomain 147..203 CDD:459649 34/55 (62%)
OAR 318..336 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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