DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gsc and vsx1

DIOPT Version :10

Sequence 1:NP_001137762.2 Gene:Gsc / 33240 FlyBaseID:FBgn0010323 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_001093670.1 Gene:vsx1 / 100101658 XenbaseID:XB-GENE-853166 Length:344 Species:Xenopus tropicalis


Alignment Length:246 Identity:73/246 - (29%)
Similarity:107/246 - (43%) Gaps:52/246 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 DSILGSRQQGGGTAPSQGSHISSNGNQNGLTSNGISLGLKRSGAESPASPNSNSSSSAAASPIRP 231
            |.|..::.:|...|||.|:..|...:...:.|.|.:: ....|.|:...|.|.|..|.       
 Frog     5 DDISEAKSKGKILAPSAGNEKSGRFHGPAMRSKGFAI-TDLLGLEAELQPPSLSLPSC------- 61

  Fly   232 QRVPAMLQHPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPNYMHAAAVAHVAAAQMQAHVSGAA 296
                   :.||..||  ..:.|:|.......||..:.:..|.........|:...|.:|      
 Frog    62 -------EGPGASLG--GVSLANGSLPLGLGFLCGFASQQPPGTTCLLPTHIPFLQPRA------ 111

  Fly   297 AGLSGHGHHPHHPHGHPHHPHLGAHHHGQHHLSH----LG--------HGPPPKRKRRHRTIFTE 349
                             .|.:|.|....:.::|.    ||        .....::||||||:||.
 Frog   112 -----------------DHQYLHASDKHKENISDDDSLLGDKNDLKASSSQAKRKKRRHRTVFTA 159

  Fly   350 EQLEQLEATFDKTHYPDVVLREQLALKVDLKEERVEVWFKNRRAKWRKQKR 400
            .|||:||..|::.|||||..||.||||.:|.|:|::|||:||||||||:::
 Frog   160 HQLEELEKAFNEAHYPDVYAREMLALKTELPEDRIQVWFQNRRAKWRKREK 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GscNP_001137762.2 Homeodomain 341..397 CDD:459649 36/55 (65%)
vsx1NP_001093670.1 Homeodomain 151..207 CDD:459649 36/55 (65%)

Return to query results.
Submit another query.