DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pph13 and alx4b

DIOPT Version :9

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001297007.1 Gene:alx4b / 497424 ZFINID:ZDB-GENE-050208-140 Length:259 Species:Danio rerio


Alignment Length:115 Identity:26/115 - (22%)
Similarity:44/115 - (38%) Gaps:31/115 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 KWRKQEKIGGL-------GGDYKEGALDLDVSY---DDSAVLGQLDSALGGGGTLLP-DT----- 112
            ||||:|:.|.:       ...|:...|....:|   .:.:.|....||....|.::| ||     
Zfish   120 KWRKRERFGQMQQVRTHFSTAYELPLLTRPENYAQIQNPSWLSGSSSASPVPGCVVPCDTVSSCM 184

  Fly   113 --PPQSSNSLDNELKASYGTGAMSPSRLSPNIFLNLNIDHLGLERGGSGL 160
              .|.|::.:.:.|......|:|:.:             |:|...|.||:
Zfish   185 TPHPHSASGVSDFLGMPSPGGSMAQT-------------HMGSLFGSSGV 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeobox 14..66 CDD:278475 1/1 (100%)
alx4bNP_001297007.1 OAR 235..252 CDD:281777
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24329
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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