DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pph13 and Awh

DIOPT Version :10

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001261379.1 Gene:Awh / 38451 FlyBaseID:FBgn0013751 Length:287 Species:Drosophila melanogaster


Alignment Length:127 Identity:42/127 - (33%)
Similarity:55/127 - (43%) Gaps:10/127 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQ 68
            |..|.|.:|.||||...|||.|:..||....||....|.:|....|::...||||||.||:.:|.
  Fly   142 GYHKSKTKRVRTTFTEEQLQVLQANFQIDSNPDGQDLERIASVTGLSKRVTQVWFQNSRARQKKH 206

  Fly    69 EKIGGLGGDYKEGA-------LDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQSSNSLDNE 123
            ...|.......||:       |.|..|:.::|   |....|.|....|..|...|.:.|..:
  Fly   207 IHAGKNKIREPEGSSFARHINLQLTYSFQNNA---QNPMHLNGSKAGLYPTHESSMDELSQD 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 24/55 (44%)
AwhNP_001261379.1 LIM1_AWH 8..61 CDD:188759
LIM2_AWH 69..123 CDD:188765
Homeodomain 149..205 CDD:459649 24/55 (44%)
Blue background indicates that the domain is not in the aligned region.

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