DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pph13 and hoxb3a

DIOPT Version :10

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:245 Identity:59/245 - (24%)
Similarity:85/245 - (34%) Gaps:63/245 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEKIGGLG 75
            :|.||.:.:.||.|||:.|....|.....|.|:|..::|:|.::::||||||.|::|.:|..|:|
Zfish   181 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSKGIG 245

  Fly    76 GDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQSSNSLDNELKASYGTGAMSPSRLSP 140
                                   .|:.|...|..|..|.|||....|.:.:.....|.||.    
Zfish   246 -----------------------SSSGGPSPTGSPPLPMQSSAGFMNSMHSMGSYDAPSPP---- 283

  Fly   141 NIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQ-AQTHPQMD----SDNQLQQHPPQQHASDPIHA 200
                :.|..|.......:.........|||.: ..|.|..|    ..|......|....| |::.
Zfish   284 ----SFNKPHQNAYAMSTAYQNPMKGCPPQQKYGNTPPDYDPHGLQGNSGNYGTPNMQGS-PVYV 343

  Fly   201 GSS------------------SHHQQQQ-------QQHQQEQHNP-QLHP 224
            |.:                  .|||...       |....:.|.| ..||
Zfish   344 GGNYVDAMPATGPSMYGLNHLPHHQSASMDYNGATQMSANQHHGPCDPHP 393

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 22/55 (40%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135
Antp-type hexapeptide 140..145
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 1/2 (50%)
Homeodomain 181..237 CDD:459649 22/55 (40%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 17/83 (20%)
DUF4074 353..415 CDD:463833 8/41 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417 4/13 (31%)
Blue background indicates that the domain is not in the aligned region.

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