DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pph13 and sebox

DIOPT Version :9

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001306981.1 Gene:sebox / 282666 ZFINID:ZDB-GENE-021206-4 Length:293 Species:Danio rerio


Alignment Length:354 Identity:84/354 - (23%)
Similarity:125/354 - (35%) Gaps:147/354 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 GTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQ 68
            |.::.:::|.||.|:..||.||||||..|.|||:..||.||....|.|:::|||||||||:..|.
Zfish    52 GHVEGQRKRKRTIFSRAQLSELERAFMITPYPDITLRERLAALTLLPESKIQVWFQNRRARSMKS 116

  Fly    69 EKIGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQSSNSLDNELKASYGTGAM 133
            :|:                                                             :
Zfish   117 KKL-------------------------------------------------------------I 120

  Fly   134 SP-SRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQAQTHPQMDSDNQLQQHPPQQHASDP 197
            :| ||.||                     .:..|:|     .|||    |..|:|.|....    
Zfish   121 TPVSRRSP---------------------AKDCTFP-----ATHP----DLNLEQSPEANK---- 151

  Fly   198 IHAGSSSHHQQ---QQQQHQQEQHNPQLHPG----LEFAASLSLDMTDGSSAYDEMKFLSVDVDQ 255
                |..||||   :|..:...|:.|.:.|.    |::|...|  .|.|.|::            
Zfish   152 ----SLRHHQQSLIRQALNPWPQNRPPISPDLPEILQWANRNS--ETPGDSSF------------ 198

  Fly   256 FTIDSFKADCI------LSMEQSQMQAYGGHSQLVGSSNELCLDGIGM-SSFGMEEGEPKSPPSL 313
               .|..::.|      .|....||..:..|.:.:.|   .|.....: ||..:::..|..|.| 
Zfish   199 ---SSCPSERIQHPFPNQSSSVWQMNCFAAHPEGLKS---YCTTSQALYSSVSVDQMIPAHPSS- 256

  Fly   314 LVLDKSL--------PSLSIGVEGIADLV 334
              |:::|        |..|:|  .|:||:
Zfish   257 --LEEALQRQALTHYPQTSLG--DISDLI 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeobox 14..66 CDD:278475 30/51 (59%)
seboxNP_001306981.1 COG5576 13..159 CDD:227863 52/205 (25%)
Homeobox 61..112 CDD:278475 29/50 (58%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 117..144 12/117 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24329
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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