DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pph13 and Sebox

DIOPT Version :10

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_032785.1 Gene:Sebox / 18292 MGIID:108012 Length:190 Species:Mus musculus


Alignment Length:203 Identity:70/203 - (34%)
Similarity:87/203 - (42%) Gaps:50/203 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 RRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEKIGGLG 75
            ||.||||:..||.||||.|....|||:..||.||....|.||::||||||||||..|        
Mouse    19 RRKRTTFSVGQLVELERVFAARPYPDISTREHLAQVTHLPEAKIQVWFQNRRAKRIK-------- 75

  Fly    76 GDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPP------QSSNSLDNELKASYGTGAMS 134
             |.|.|||:           .:|:  |......|||||.      .||:.|.....|.| |.|..
Mouse    76 -DRKPGALN-----------SRLE--LPPNSCSLPDTPQLPWDPGTSSHPLHPTSSAQY-TSACP 125

  Fly   135 P--SRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQAQTHPQMDSDNQLQQHPPQQ---HA 194
            |  |.|.|       |...|....|:.::..|.|   ...:..|      :.|:|..||.   :.
Mouse   126 PQTSCLGP-------ILGPGQSWSGAKVAAPWGT---SGASGIH------SSLEQIVPQTSLGNL 174

  Fly   195 SDPIHAGS 202
            ||.|:..:
Mouse   175 SDLIYTSA 182

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 33/55 (60%)