DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pph13 and vab-3

DIOPT Version :10

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:NP_001024570.1 Gene:vab-3 / 181251 WormBaseID:WBGene00006870 Length:455 Species:Caenorhabditis elegans


Alignment Length:268 Identity:82/268 - (30%)
Similarity:117/268 - (43%) Gaps:50/268 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 MKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWRKQEK 70
            :|||.:|.||:|..:|::.||:.|:||||||||.||.||.:|.|.|||:||||.|||||||::||
 Worm   213 LKRKLQRNRTSFTQVQIESLEKEFERTHYPDVFARERLAQKIQLPEARIQVWFSNRRAKWRREEK 277

  Fly    71 IGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQSSNSLDNELKASYGTGAMSP 135
            :..     |..:             |.:||:| ..||..|.....:.:::.|.:    |:.|.:|
 Worm   278 MRN-----KRSS-------------GTMDSSL-SNGTPTPTPGSVTGSNMTNPI----GSPASTP 319

  Fly   136 SRLSPNIFLNLNID---------HLGLERG---------GSGLSMEWSTYPPQTQAQTHPQMDSD 182
            :|...|...||...         :.||.:.         .:|.||  :.||..|..|.|      
 Worm   320 NRFPSNNSANLPTTNFVPQTSQMYAGLSQPAMDPYSFGIANGFSM--APYPQVTDFQPH------ 376

  Fly   183 NQLQQHPPQQHASDPIHAGSSSHHQQQQQQHQQEQHNPQLHPGLEFAASLSLDMTDGSSAYDEMK 247
            :..|...|.......:........|............|.|..|:....|..|:..|.|..:.:|.
 Worm   377 HMFQGRSPYDFPYPRMPTNGHGFQQSMSPATTAVGDIPTLSSGMSLPVSAVLNSIDPSLTHSQMH 441

  Fly   248 FLSVDVDQ 255
            .|| |:.|
 Worm   442 ELS-DLTQ 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 35/55 (64%)
vab-3NP_001024570.1 PAX 5..129 CDD:128645
Homeodomain 219..274 CDD:459649 35/54 (65%)
Blue background indicates that the domain is not in the aligned region.

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