DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pph13 and alx1

DIOPT Version :9

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:XP_002931669.1 Gene:alx1 / 100489661 XenbaseID:XB-GENE-853095 Length:326 Species:Xenopus tropicalis


Alignment Length:209 Identity:75/209 - (35%)
Similarity:100/209 - (47%) Gaps:43/209 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DKGTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWR 66
            |......|:||:||||.:|||:|||:.||:||||||:.||:||:|.:||||||||||||||||||
 Frog   124 DSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWR 188

  Fly    67 KQEKIGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLP--DTPPQSSNSL--DNELKAS 127
            |:|:.|.:.......|...|:|                   :||  |:.||..|:|  .|....|
 Frog   189 KRERYGQIQQAKSHFAATYDIS-------------------VLPRADSYPQIQNNLWAGNPSGGS 234

  Fly   128 YGTGAMSPSRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQAQTHPQMDSDNQLQQHPPQQ 192
            ..|..|.|...|..:               :..|....|..|.|....|     .||....|...
 Frog   235 VVTSCMLPREPSACM---------------TPYSHSTRTDSPYTSFTNH-----QNQFSHVPLNN 279

  Fly   193 HASDPIHAGSSSHH 206
            ..::.:.:||::.|
 Frog   280 FFTESLLSGSANGH 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeobox 14..66 CDD:278475 39/51 (76%)
alx1XP_002931669.1 Homeobox 135..189 CDD:365835 40/53 (75%)
OAR 302..320 CDD:367680
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D454642at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5874
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.040

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