DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pph13 and shox

DIOPT Version :10

Sequence 1:NP_477330.1 Gene:Pph13 / 33239 FlyBaseID:FBgn0023489 Length:357 Species:Drosophila melanogaster
Sequence 2:XP_004911874.1 Gene:shox / 100486480 XenbaseID:XB-GENE-920752 Length:334 Species:Xenopus tropicalis


Alignment Length:194 Identity:67/194 - (34%)
Similarity:82/194 - (42%) Gaps:67/194 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 DKGTMKRKQRRYRTTFNTLQLQELERAFQRTHYPDVFFREELAVRIDLTEARVQVWFQNRRAKWR 66
            :.|..|.||||.||.|...||.||||.|..|||||.|.||||:.|:.|:||||||||||||||.|
 Frog   148 EDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 212

  Fly    67 KQEKIGGLGGDYKEGALDLDVSYDDSAVLGQLDSALGGGGTLLPDTPPQSSNSLDNELKASYGTG 131
            |||                          .|:..  ||.|.:|                   |||
 Frog   213 KQE--------------------------NQMHK--GGYGVIL-------------------GTG 230

  Fly   132 A-MSPSRLSPNIFLNLNIDHLGLERGGSGLSMEWSTYPPQTQ----AQTHPQMDSDNQLQQHPP 190
            : :...|::|  ::|:           ..|.|.:.....|.|    |..||.:..  .|..|.|
 Frog   231 SHLETCRVAP--YVNM-----------GALRMPFQQVQAQLQLEGVAHAHPHLHP--HLAAHAP 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pph13NP_477330.1 Homeodomain 11..67 CDD:459649 38/55 (69%)
shoxXP_004911874.1 Homeodomain 157..213 CDD:459649 38/55 (69%)
OAR 314..330 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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