DRSC/TRiP Functional Genomics Resources

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Protein Alignment cold and Lypd8

DIOPT Version :10

Sequence 1:NP_608536.1 Gene:cold / 33237 FlyBaseID:FBgn0031268 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_081615.2 Gene:Lypd8 / 70163 MGIID:1917413 Length:255 Species:Mus musculus


Alignment Length:118 Identity:23/118 - (19%)
Similarity:42/118 - (35%) Gaps:23/118 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 VLVAAVYLCSQVNFVAGLECYVC----SNQTGNTEKCLNTIKTCEPFENVCGTEIRWGSQPYFSE 69
            |.:|.|.....:..|..|.|..|    |...|...:|.....:|  .|:...:.:          
Mouse     4 VFIAGVIAAFAITVVDSLNCTQCYTYNSTCDGQATECNEQSFSC--VESSINSTL---------- 56

  Fly    70 GALKQYYVSKRCMTKEQCQSKRKRYMQLYCTHIWYEDWA---CNECCKGDRCN 119
            |.....|.:|.|......::..:   ..:..|: ::|..   .::||:|:.||
Mouse    57 GGFLHVYQNKFCSASNCTENSTE---VAFTVHL-FDDQRYHFASQCCQGESCN 105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coldNP_608536.1 TFP_LU_ECD_Cold 26..121 CDD:467128 19/101 (19%)
Lypd8NP_081615.2 TFP_LU_ECD_LYPD8_rpt1 17..108 CDD:467098 20/105 (19%)
TFP_LU_ECD_LYPD8_rpt2 117..194 CDD:467099
Blue background indicates that the domain is not in the aligned region.

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