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Protein Alignment cold and Spaca4
DIOPT Version :9
Sequence 1: | NP_001259838.1 |
Gene: | cold / 33237 |
FlyBaseID: | FBgn0031268 |
Length: | 153 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001103093.1 |
Gene: | Spaca4 / 691120 |
RGDID: | 1587464 |
Length: | 127 |
Species: | Rattus norvegicus |
Alignment Length: | 144 |
Identity: | 36/144 - (25%) |
Similarity: | 54/144 - (37%) |
Gaps: | 32/144 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 4 WEIAVVLVAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEPFENVC--GTEIRWGSQPY 66
|.:.:||| ||.....:. :|..| :..::.:|..|...|...|: | |..:..|..|.
Rat 5 WLLLLVLV----LCPGGTGIK--DCVFC--ELTDSARCPGTHMRCGDDED-CFIGHGVAQGVGPI 60
Fly 67 FSEGALKQYYVSKRCMTKEQCQSKRKRYMQLYCTHIWYEDWACNECCKGDRCN--YFVISGAPSR 129
.::|.:. |..|..:|... ||.|..: ....||.|..|| ..:.:||.|
Rat 61 INKGCVH----STNCGREEPIS-----YMGLTYS-------LTTTCCSGHLCNGGAGLATGATS- 108
Fly 130 QGYGVCLTLLTALL 143
..:.|.||..||
Rat 109 --LSLGLQLLRGLL 120
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
cold | NP_001259838.1 |
LU |
26..119 |
CDD:299177 |
20/94 (21%) |
Spaca4 | NP_001103093.1 |
None |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1493078at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 1.010 |
|
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