DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cold and Pinlyp

DIOPT Version :9

Sequence 1:NP_001259838.1 Gene:cold / 33237 FlyBaseID:FBgn0031268 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001032220.1 Gene:Pinlyp / 641361 MGIID:3615324 Length:212 Species:Mus musculus


Alignment Length:112 Identity:30/112 - (26%)
Similarity:45/112 - (40%) Gaps:16/112 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LVAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEPFENVCGTEIRWGSQPYFSEGALKQ 74
            |:|...||:.:.....|.|.||.   |:...|...:||||..::.|...:...|    ::|. |.
Mouse    11 LLAFTLLCTLLGLGCPLTCEVCK---GSGHTCSGKMKTCEDGKDACVVLVSESS----TKGR-KS 67

  Fly    75 YYVSKRCMTKEQCQSKRKRYMQLYCTHIWYEDWACN--ECCKGDRCN 119
            ....|.||..:.|      |.....|.:...|:..:  .||:.|.||
Mouse    68 VNTFKACMKYKDC------YSGFVSTTMTPSDYMVSNAHCCQSDGCN 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coldNP_001259838.1 LU 26..119 CDD:299177 24/94 (26%)
PinlypNP_001032220.1 LU 27..107 CDD:385681 24/93 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR20914
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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