DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cold and Ly6g6d

DIOPT Version :9

Sequence 1:NP_001259838.1 Gene:cold / 33237 FlyBaseID:FBgn0031268 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_258439.1 Gene:Ly6g6d / 114654 MGIID:2148931 Length:135 Species:Mus musculus


Alignment Length:140 Identity:37/140 - (26%)
Similarity:46/140 - (32%) Gaps:46/140 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 CYVCSNQTGNTEKCLNTIKTCEPFENVCGTEIRWGSQPYFSEGALKQYYVSKRCMTKEQCQSKRK 92
            ||.|..  |.:..|..|:.||...|. ||...| ..|| .||.|            |:...:...
Mouse    24 CYDCGG--GPSNSCKQTVITCGEGER-CGFLDR-KPQP-SSEQA------------KQPSATLSH 71

  Fly    93 RYMQLYCTHIWYEDWACNE----------------CCKGDRCNYFVISGAPSRQGYGVCLTLLTA 141
            .|.....||      .||:                ||.||.||..|.|....       |.:|.|
Mouse    72 HYPACVATH------HCNQVAIESVGDVTFTTQKNCCFGDLCNSAVASSVTP-------LCILAA 123

  Fly   142 LLGLGSWLIP 151
            .:...:||:|
Mouse   124 AVTTLAWLLP 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coldNP_001259838.1 LU 26..119 CDD:299177 27/106 (25%)
Ly6g6dNP_258439.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1493078at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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