DRSC/TRiP Functional Genomics Resources

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Protein Alignment cold and LOC101730430

DIOPT Version :10

Sequence 1:NP_608536.1 Gene:cold / 33237 FlyBaseID:FBgn0031268 Length:153 Species:Drosophila melanogaster
Sequence 2:XP_004919837.1 Gene:LOC101730430 / 101730430 XenbaseID:XB-GENE-29084563 Length:215 Species:Xenopus tropicalis


Alignment Length:116 Identity:29/116 - (25%)
Similarity:45/116 - (38%) Gaps:20/116 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VVLVAAVYLCSQ-VNFVAGLECYVCSNQTGNTEKCLNTIKTCEPFENVCG---TEIRWGSQPYFS 68
            ::.|..:.|||. ::....|||.|||:.:|.|  |....:.|:..::.|.   ||.        |
 Frog     1 MMAVLFLLLCSSLISAGVALECEVCSSSSGRT--CSGHFEICKDPQSRCMVTLTET--------S 55

  Fly    69 EGALKQYYVSKRCMTKEQCQSKRKRYMQLYCTHIWYEDWACNECCKGDRCN 119
            .|.:|...:.|.|.:...|..........|...:      .:.||..|.||
 Frog    56 LGDVKSAVLKKACGSSYNCSHSVSLRTNGYGVRV------SSICCDTDYCN 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coldNP_608536.1 TFP_LU_ECD_Cold 26..121 CDD:467128 25/97 (26%)
LOC101730430XP_004919837.1 TFP 20..100 CDD:480272 23/95 (24%)
TFP_LU_ECD_PINLYP_rpt2 114..>167 CDD:467102
Blue background indicates that the domain is not in the aligned region.

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