DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cold and lypc

DIOPT Version :9

Sequence 1:NP_001259838.1 Gene:cold / 33237 FlyBaseID:FBgn0031268 Length:153 Species:Drosophila melanogaster
Sequence 2:NP_001373229.1 Gene:lypc / 100538040 ZFINID:ZDB-GENE-131127-361 Length:126 Species:Danio rerio


Alignment Length:143 Identity:35/143 - (24%)
Similarity:54/143 - (37%) Gaps:27/143 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 IAVVL--VAAVYLCSQVNFVAGLECYVCSNQTGNTEKCLNTIKTCEPFENVCGTEIRWGSQPYFS 68
            :|.||  :..:||...   |..|.||.|...:.:...||.....|. ...||     ..|:....
Zfish     1 MAYVLRCILFLYLLPS---VVPLLCYTCVFPSISPLDCLKFPTKCS-LGQVC-----LSSKAVAR 56

  Fly    69 EGALKQYYVSKRCMTKEQCQSKRKRYMQ-LYCTHIWYEDWACNECCKGDRCNYFVISGA---PSR 129
            .|.|:.::..|.|.....|....::::| |..|.       .::||....||:...:.|   || 
Zfish    57 RGDLEIHFYEKSCALPALCGLTGEKFIQGLNFTF-------RSDCCDTLLCNHSTANSAFVWPS- 113

  Fly   130 QGYGVCLTLLTAL 142
                :.|:||..|
Zfish   114 ----ILLSLLFTL 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coldNP_001259838.1 LU 26..119 CDD:299177 20/93 (22%)
lypcNP_001373229.1 LU 22..101 CDD:415855 19/91 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1493078at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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