DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nle and AT5G52820

DIOPT Version :9

Sequence 1:NP_477294.2 Gene:Nle / 33234 FlyBaseID:FBgn0021874 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_200094.1 Gene:AT5G52820 / 835359 AraportID:AT5G52820 Length:473 Species:Arabidopsis thaliana


Alignment Length:480 Identity:252/480 - (52%)
Similarity:325/480 - (67%) Gaps:12/480 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 MQETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFVGED 72
            |.:||..:     |:...|....|...|..:.:|......||..:.|..|.|||..||.|:|.::
plant     3 MMDTDEGK-----TVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDE 62

  Fly    73 EIKKSLEDTLDLASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLASG 137
            |:...:...|:...|..|.|:.||||.||||::|||.||:.::.||||||:.::|||||..||||
plant    63 ELLVPVGTYLEKNKVSVEKVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQLASG 127

  Fly   138 SGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWDPETGQQKGRPLSG 202
            |||||||||||.||||.|||.|||.|||.|:|:||||.|.||.|:|.|..|:|:.|:.:|.||:|
plant   128 SGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTG 192

  Fly   203 HKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAGHTNAVTAVRWGGAGLIYT 267
            |||.|..::|||.|....||:..::|.|||.||||:.|.:.::.::|||.|||.|:|||.|:|||
plant   193 HKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGHTLAVTCVKWGGDGIIYT 257

  Fly   268 SSKDRTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTGPFHPVKDRSKSHLSLSTEELQES 332
            .|:|.|:|||....|.|.|...||.||:|::||||:||||||.|      ..:.......|.::.
plant   258 GSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAF------DHTGRQYPPNEEKQK 316

  Fly   333 ALKRYQAVCPDEVESLVSCSDDNTLYLWRNNQNK-CVERMTGHQNVVNDVKYSPDVKLIASASFD 396
            ||:||.....|..|.|||.|||.|::||..:.:| ..:|:||||.:||.|.:|||.|.|||||||
plant   317 ALERYNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFD 381

  Fly   397 KSVRLWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWSVQTKKLAQELPGHADE 461
            ||||||....||::..|||||..||.|:|||||||::|||||||||:|.::||||.|:|||||||
plant   382 KSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADE 446

  Fly   462 VFGVDWAPDGSRVASGGKDKVIKLW 486
            ||.|||:|||.:|.|||||:|:|||
plant   447 VFAVDWSPDGEKVVSGGKDRVLKLW 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NleNP_477294.2 NLE 22..82 CDD:285380 16/59 (27%)
WD40 110..147 CDD:278812 25/36 (69%)
WD40 112..486 CDD:225201 213/374 (57%)
WD40 repeat 123..159 CDD:293791 27/35 (77%)
WD40 153..487 CDD:238121 186/335 (56%)
WD40 repeat 164..202 CDD:293791 20/37 (54%)
WD40 repeat 208..249 CDD:293791 15/40 (38%)
WD40 repeat 254..289 CDD:293791 19/34 (56%)
WD40 repeat 296..372 CDD:293791 30/76 (39%)
WD40 repeat 378..414 CDD:293791 22/35 (63%)
WD40 repeat 420..456 CDD:293791 25/35 (71%)
WD40 repeat 462..486 CDD:293791 16/23 (70%)
AT5G52820NP_200094.1 NLE 12..72 CDD:400462 16/59 (27%)
WD40 101..430 CDD:238121 185/334 (55%)
WD40 repeat 113..149 CDD:293791 27/35 (77%)
WD40 repeat 154..192 CDD:293791 20/37 (54%)
WD40 repeat 198..239 CDD:293791 15/40 (38%)
WD40 repeat 244..279 CDD:293791 19/34 (56%)
WD40 repeat 286..357 CDD:293791 30/76 (39%)
WD40 repeat 363..399 CDD:293791 22/35 (63%)
WD40 repeat 405..441 CDD:293791 25/35 (71%)
WD40 433..472 CDD:197651 30/39 (77%)
WD40 repeat 447..471 CDD:293791 16/23 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0271
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5494
Inparanoid 1 1.050 515 1.000 Inparanoid score I296
OMA 1 1.010 - - QHG53974
OrthoDB 1 1.010 - - D723347at2759
OrthoFinder 1 1.000 - - FOG0005114
OrthoInspector 1 1.000 - - oto3701
orthoMCL 1 0.900 - - OOG6_101916
Panther 1 1.100 - - LDO PTHR19848
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3634
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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