DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nle and Traf7

DIOPT Version :10

Sequence 1:NP_477294.2 Gene:Nle / 33234 FlyBaseID:FBgn0021874 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_001402082.1 Gene:Traf7 / 360491 RGDID:1559653 Length:670 Species:Rattus norvegicus


Alignment Length:465 Identity:112/465 - (24%)
Similarity:179/465 - (38%) Gaps:107/465 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KQKMQETDTEQEATPHTIQARLVSDTGEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFV 69
            |:.:|:||...    |.:...|.....|.|         .....||.:...:.:.|::....|.|
  Rat   288 KEFLQQTDDRF----HEMHVALAQKDQEIA---------FLRSMLGKLSEKIDQLEKSLELKFDV 339

  Fly    70 GEDEIKKSLEDTLDL---ASVDTENVIDI----------VYQPQAVFKVRPVTRCTSSMPGHAEA 121
            .::...|..||.::.   ||:..:.:..|          .|.||.:||      |..:..||...
  Rat   340 LDENQSKLSEDLMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFK------CKGTFVGHQGP 398

  Fly   122 VVSLNFSPDGAHLASGSGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSII 186
            |..|.....|..|.|||.|.|:::||        |||.:|                  |:     
  Rat   399 VWCLCVYSMGDLLFSGSSDKTIKVWD--------TCTTYK------------------CQ----- 432

  Fly   187 IWDPETGQQKGRPLSGHKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAGHT 251
                       :.|.||...:..|..:      .| ||.|.|.|....:||::..|.:..|..|.
  Rat   433 -----------KTLEGHDGIVLALCIQ------GC-KLYSGSADCTIIVWDIQNLQKVNTIRAHD 479

  Fly   252 NAV-TAVRWGGAGLIYTSSKDRTVKMWR--AADGILCRTFSGHAHWVNNIALSTDYVLRTGPFHP 313
            |.| |.|  ....::::.|. :.:|:|.  ..:..|.:..:|..|||..:..:..| |.:|.:..
  Rat   480 NPVCTLV--SSHNMLFSGSL-KAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSY-LYSGSYQT 540

  Fly   314 VK-----DRSKSH-LSLSTEELQESALKRYQAVCPDEVESLVSCSDDNTLYLWRNNQNKCVERMT 372
            :|     .....| |..|...:...|:..:..||.         :.:|.:::|.....:.|..:|
  Rat   541 IKIWDIRTLDCIHVLQTSGGSVYSIAVTNHHIVCG---------TYENLIHVWDIESKEQVRTLT 596

  Fly   373 GHQNVVN--DVKYSPDVKLIASASFDKSVRLWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSG 435
            ||...|.  .|..:||...:.|||:|:|:|:|...:.....|...|..:|..:|.|. .||. ||
  Rat   597 GHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSR-GRLF-SG 659

  Fly   436 SKDSTLKVWS 445
            :.|||:|||:
  Rat   660 AVDSTVKVWT 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NleNP_477294.2 NLE 22..82 CDD:462380 11/59 (19%)
WD40 84..486 CDD:441893 96/386 (25%)
WD40 repeat 123..159 CDD:293791 12/35 (34%)
WD40 repeat 164..202 CDD:293791 2/37 (5%)
WD40 repeat 208..249 CDD:293791 11/40 (28%)
WD40 repeat 254..289 CDD:293791 7/37 (19%)
WD40 repeat 296..372 CDD:293791 13/81 (16%)
WD40 repeat 378..414 CDD:293791 12/37 (32%)
WD40 repeat 420..456 CDD:293791 13/26 (50%)
WD40 repeat 462..486 CDD:293791
Traf7NP_001402082.1 mRING-HC-C3HC3D_TRAF7 124..168 CDD:438306
Sina 208..>269 CDD:460824
DD_cGKI 282..322 CDD:473057 10/46 (22%)
PRK03918 283..>373 CDD:235175 19/97 (20%)
WD40 <387..668 CDD:441893 87/350 (25%)
WD40 repeat 443..477 CDD:293791 11/40 (28%)
WD40 repeat 482..517 CDD:293791 7/37 (19%)
WD40 repeat 527..556 CDD:293791 5/29 (17%)
WD40 repeat 562..596 CDD:293791 6/42 (14%)
WD40 repeat 604..639 CDD:293791 10/34 (29%)
WD40 repeat 646..668 CDD:293791 11/23 (48%)
Blue background indicates that the domain is not in the aligned region.

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