DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nle and SPCC18.05c

DIOPT Version :9

Sequence 1:NP_477294.2 Gene:Nle / 33234 FlyBaseID:FBgn0021874 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_588384.1 Gene:SPCC18.05c / 2539380 PomBaseID:SPCC18.05c Length:502 Species:Schizosaccharomyces pombe


Alignment Length:498 Identity:223/498 - (44%)
Similarity:301/498 - (60%) Gaps:21/498 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KKQKMQETDTE-QEATP-HTIQARLVSDTGEEAGPPIDLPAGITTQQLGLICNALLKN-EEATPY 65
            ||:.:..|..| .|..| ..:|.|...|:.|.|.  :.:|...:.:||..:.|.||:| ::..||
pombe    13 KKESLNPTTIEIPEKFPLVNVQFRASDDSNELAS--LLVPGNSSVRQLEALLNQLLENSDDPVPY 75

  Fly    66 LFFVGEDEIKKSLEDTLDLASV------DTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVS 124
            .|.:..::....::|.| ..||      .||:.:.::|.|||||:||.|||||:||.||...::|
pombe    76 NFALHHEDETIEIQDNL-YTSVFHNGLMKTEDHLTLLYTPQAVFRVRAVTRCTASMNGHDGTIIS 139

  Fly   125 LNFSPD-GAHLASGSGDTTVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIW 188
            ..|||. .:.|.:||||.|.||||.:|:||..|..||..||.||:||||...:|:|....:|..|
pombe   140 AQFSPSTSSRLVTGSGDFTARLWDCDTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFW 204

  Fly   189 DPETGQQKGRPLSGHKKHINCLAWEPYHRDPECRK--LASASGDGDCRIWDVKLGQCLMNIAGHT 251
            ||:.|...|..|..|.|.|..|.|:|.|..|:...  |||.|.|...|||:|||...|..::|||
pombe   205 DPKKGSPIGDALRRHTKPIMALCWQPLHLAPDSGPYLLASGSKDNTVRIWNVKLRTLLFTLSGHT 269

  Fly   252 NAVTAVRWGGAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTGPFHPVKD 316
            ..:|.|||||...||:||.|:|:::|.|.||.......|||..||:::|||::|||:|.:.....
pombe   270 APITCVRWGGQNWIYSSSYDKTIRIWDAKDGKCLHILKGHAARVNHLSLSTEHVLRSGAYDHTDF 334

  Fly   317 RSKSHLSLSTEELQESALKRYQAVCPDEVESLVSCSDDNTLYLW-RNNQNKCVERMTGHQNVVND 380
            :.|   |.|.|  :..|.:||:|......|.|||.|||..|.|| .....|.:.:|.|||.|||.
pombe   335 KPK---SFSDE--RRKAKERYEACLKQSGERLVSASDDLQLILWDPQKSTKPITKMHGHQKVVNH 394

  Fly   381 VKYSPDVKLIASASFDKSVRLWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWS 445
            ..:|||.:.||:||||.|||||....|:::||.||||.|||..|||.||||:||.|:|:|||||.
pombe   395 ASFSPDGRCIATASFDSSVRLWDGKTGKFLATLRGHVAAVYQCAWSTDSRLLVSSSQDTTLKVWD 459

  Fly   446 VQTKKLAQELPGHADEVFGVDWAPDGSRVASGGKDKVIKLWAY 488
            |::||:..:||||.|:||.|||:|||.||||||.||.:::|::
pombe   460 VRSKKMKFDLPGHEDQVFAVDWSPDGQRVASGGADKAVRIWSH 502

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NleNP_477294.2 NLE 22..82 CDD:285380 16/60 (27%)
WD40 110..147 CDD:278812 19/37 (51%)
WD40 112..486 CDD:225201 183/377 (49%)
WD40 repeat 123..159 CDD:293791 18/36 (50%)
WD40 153..487 CDD:238121 162/336 (48%)
WD40 repeat 164..202 CDD:293791 16/37 (43%)
WD40 repeat 208..249 CDD:293791 17/42 (40%)
WD40 repeat 254..289 CDD:293791 16/34 (47%)
WD40 repeat 296..372 CDD:293791 27/76 (36%)
WD40 repeat 378..414 CDD:293791 19/35 (54%)
WD40 repeat 420..456 CDD:293791 21/35 (60%)
WD40 repeat 462..486 CDD:293791 16/23 (70%)
SPCC18.05cNP_588384.1 WD40 repeat 476..500 CDD:293791 16/23 (70%)
NLE 31..93 CDD:285380 17/64 (27%)
WD40 125..163 CDD:197651 19/37 (51%)
WD40 127..501 CDD:225201 183/378 (48%)
WD40 repeat 137..175 CDD:293791 18/37 (49%)
WD40 169..501 CDD:238121 162/336 (48%)
WD40 repeat 181..218 CDD:293791 15/36 (42%)
WD40 repeat 223..266 CDD:293791 18/42 (43%)
WD40 repeat 273..307 CDD:293791 16/33 (48%)
WD40 repeat 392..428 CDD:293791 19/35 (54%)
WD40 repeat 434..470 CDD:293791 21/35 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0271
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5494
Inparanoid 1 1.050 406 1.000 Inparanoid score I371
OMA 1 1.010 - - QHG53974
OrthoFinder 1 1.000 - - FOG0005114
OrthoInspector 1 1.000 - - oto100453
orthoMCL 1 0.900 - - OOG6_101916
Panther 1 1.100 - - LDO PTHR19848
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R814
SonicParanoid 1 1.000 - - X3634
TreeFam 1 0.960 - -
1312.860

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