DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Nle and Nle1

DIOPT Version :9

Sequence 1:NP_477294.2 Gene:Nle / 33234 FlyBaseID:FBgn0021874 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_663406.2 Gene:Nle1 / 217011 MGIID:2429770 Length:485 Species:Mus musculus


Alignment Length:477 Identity:277/477 - (58%)
Similarity:352/477 - (73%) Gaps:5/477 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QEATPHTIQARLV---SDTGEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFVGEDEIKK 76
            :||....:|..||   .:.|:..|.|.|:|..||..:|.|:|||||..||..|..|:|.:.||..
Mouse     7 EEAAAGDVQRLLVQFQDEGGQLLGSPFDVPVDITPDKLQLVCNALLAQEEPLPLAFYVHDAEIVS 71

  Fly    77 SLEDTLDLASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLASGSGDT 141
            ||..||:..||:||.::||:|||||||:||.|||||||:.||:|||:|:.|||.|.:||||||||
Mouse    72 SLGKTLESQSVETEKIVDIIYQPQAVFRVRAVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDT 136

  Fly   142 TVRLWDLNTETPHFTCTGHKQWVLCVSWAPDGKRLASGCKAGSIIIWDPETGQQKGRPLSGHKKH 206
            |||.|||:||||||||.||:.|||.:||:||||:||||||.|.:::|||.||.|.||.|:||.|.
Mouse   137 TVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQVLLWDPSTGLQVGRTLTGHSKW 201

  Fly   207 INCLAWEPYHRDPECRKLASASGDGDCRIWDVKLGQCLMNIAGHTNAVTAVRWGGAGLIYTSSKD 271
            |..|:|||.|.:||||.:||:|.||..|:||...|:|...:.|||.:||.:||||.||:|::|:|
Mouse   202 ITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGLLYSASQD 266

  Fly   272 RTVKMWRAADGILCRTFSGHAHWVNNIALSTDYVLRTGPFHPVKDR-SKSHLSLSTEELQESALK 335
            ||:|:|||.||:||||..||.||||.:||||||.||||.|.|.:.. :...|..|.:||:|.|..
Mouse   267 RTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSLKELKERASS 331

  Fly   336 RYQAVCPDEVESLVSCSDDNTLYLWRNNQN-KCVERMTGHQNVVNDVKYSPDVKLIASASFDKSV 399
            ||..|.....|.|||.|||.||:||...:: |.:.||||||.::|.|.:|||.:::||||||||:
Mouse   332 RYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSI 396

  Fly   400 RLWRASDGQYMATFRGHVQAVYTVAWSADSRLIVSGSKDSTLKVWSVQTKKLAQELPGHADEVFG 464
            :||....|:|:|:.||||.|||.:||||||||:||||.|||||||.|:.:|||.:||||||||:.
Mouse   397 KLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLATDLPGHADEVYA 461

  Fly   465 VDWAPDGSRVASGGKDKVIKLW 486
            |||:|||.|||||||||.:::|
Mouse   462 VDWSPDGQRVASGGKDKCLRIW 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NleNP_477294.2 NLE 22..82 CDD:285380 26/62 (42%)
WD40 110..147 CDD:278812 26/36 (72%)
WD40 112..486 CDD:225201 227/375 (61%)
WD40 repeat 123..159 CDD:293791 27/35 (77%)
WD40 153..487 CDD:238121 198/336 (59%)
WD40 repeat 164..202 CDD:293791 24/37 (65%)
WD40 repeat 208..249 CDD:293791 19/40 (48%)
WD40 repeat 254..289 CDD:293791 23/34 (68%)
WD40 repeat 296..372 CDD:293791 35/77 (45%)
WD40 repeat 378..414 CDD:293791 18/35 (51%)
WD40 repeat 420..456 CDD:293791 25/35 (71%)
WD40 repeat 462..486 CDD:293791 16/23 (70%)
Nle1NP_663406.2 NLE 17..77 CDD:285380 25/59 (42%)
WD40 106..484 CDD:238121 229/378 (61%)
WD40 107..485 CDD:225201 228/377 (60%)
WD 1 112..151 29/38 (76%)
WD 2 154..193 24/38 (63%)
WD40 repeat 159..197 CDD:293791 24/37 (65%)
WD 3 197..241 23/43 (53%)
WD40 repeat 203..244 CDD:293791 19/40 (48%)
WD 4 244..282 24/37 (65%)
WD40 repeat 249..284 CDD:293791 23/34 (68%)
WD40 repeat 291..369 CDD:293791 35/77 (45%)
WD 5 327..366 17/38 (45%)
WD 6 370..409 20/38 (53%)
WD40 repeat 375..411 CDD:293791 18/35 (51%)
WD 7 412..451 29/38 (76%)
WD40 repeat 417..453 CDD:293791 25/35 (71%)
WD 8 454..484 22/30 (73%)
WD40 repeat 459..483 CDD:293791 16/23 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834631
Domainoid 1 1.000 87 1.000 Domainoid score I8024
eggNOG 1 0.900 - - E1_KOG0271
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5494
Inparanoid 1 1.050 585 1.000 Inparanoid score I996
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53974
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005114
OrthoInspector 1 1.000 - - oto91966
orthoMCL 1 0.900 - - OOG6_101916
Panther 1 1.100 - - LDO PTHR19848
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R814
SonicParanoid 1 1.000 - - X3634
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.