DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nle and dyci-1

DIOPT Version :9

Sequence 1:NP_477294.2 Gene:Nle / 33234 FlyBaseID:FBgn0021874 Length:488 Species:Drosophila melanogaster
Sequence 2:NP_001370459.1 Gene:dyci-1 / 177440 WormBaseID:WBGene00015927 Length:643 Species:Caenorhabditis elegans


Alignment Length:507 Identity:104/507 - (20%)
Similarity:181/507 - (35%) Gaps:126/507 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ARLVSDT--GEEAGPPIDLPAGITTQQLGLICNALLKNEEATPYLFFVG--EDEIKKSLEDTLDL 84
            |:|:..|  |::         |:|.|:         ..|:.|..:..|.  .||.|..|  |||.
 Worm   183 AKLLGQTKQGDK---------GLTRQE---------TEEKKTQTVQIVPPLSDEEKYRL--TLDP 227

  Fly    85 ASVDTENVIDIVYQPQAVFKVRPVTRCTSSMPGHAEAVVSLNFSPDGAHLASGSGDT--TVRLWD 147
            ..:|:.|           ...:.::|..:.     |..:.:|::.|....|..|.|.  ..:::.
 Worm   228 EFLDSFN-----------RSCKVISRALNE-----EIDICINYTKDPYEKAIASDDLLHLAQVYQ 276

  Fly   148 LNTETPHFTCTG-----HKQWVLCVSWAPDGKRLASGC-----KAGSIIIWDPETGQQKGRPLSG 202
            ..|.|.....||     |...:|.||:.|        |     ..|.|::|:.::.:.....:..
 Worm   277 DETWTAKRLVTGMAFSEHYPDLLAVSYGP--------CDIPNEPPGVIVVWNTKSKRMTAEFIVY 333

  Fly   203 HKKHINCLAWEPYHRDPECRKLASASGDGDCRIWDVKL-------GQCLMNIAGHTNAVTAVRWG 260
            .:..|..:|:..:|    ...|.:....|...:||.:|       .:..:....||..|:.:   
 Worm   334 CQSEIQSVAFARFH----AHLLLAGCESGQICVWDNRLTSRKLPINRSPLTTQAHTYTVSCL--- 391

  Fly   261 GAGLIYTSSKDRTVKMWRAADGILCRTFSGHAHW-VNNIALSTD---YVLRTGPFHPVKDRSKSH 321
              .::.|.:....|.:.|  ||.:|       .| |:|:....|   .:.:.|     |..|.:.
 Worm   392 --AVVGTKNAHNFVSLSR--DGRIC-------SWNVDNLTQPVDGKELMTKEG-----KAASATR 440

  Fly   322 LSLSTEELQESALKRYQAVCPDEVESLVSCSDDNTLYLWRNNQNKCVER----MTGHQNVVNDVK 382
            :|....|:|..      .|..|..|.|.:.         ||..:..|.:    ..||...:..::
 Worm   441 MSFPIGEMQTF------VVGTDTGEILAAS---------RNGADPAVIKTDVCYKGHSGTLTGIE 490

  Fly   383 Y---SPDV---KLIASASFDKSVRLWRASDGQYMATFRGHVQAVYTVAWS-ADSRLIVSGSKDST 440
            :   |..|   .|..|:|.|.:|:||...|.....:|..|...|..|||| ....:..|...|..
 Worm   491 FHRASGVVDFSHLFISSSHDWTVKLWSTKDANLKFSFESHPDLVLDVAWSPVHPAVFASIDADGN 555

  Fly   441 LKVWSVQ------TKKLAQELPGHADEVFGVDWAPDGSRVASGGKDKVIKLW 486
            :.||::.      ..:|.....|.:..:..:.|:|||..|..|..:..:.::
 Worm   556 IFVWNLNEDVEGPVARLRAGAEGESVYMNRLIWSPDGKHVFVGDDEGRVHMY 607

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NleNP_477294.2 NLE 22..82 CDD:285380 14/61 (23%)
WD40 110..147 CDD:278812 7/38 (18%)
WD40 112..486 CDD:225201 84/413 (20%)
WD40 repeat 123..159 CDD:293791 7/37 (19%)
WD40 153..487 CDD:238121 76/372 (20%)
WD40 repeat 164..202 CDD:293791 8/42 (19%)
WD40 repeat 208..249 CDD:293791 7/47 (15%)
WD40 repeat 254..289 CDD:293791 7/34 (21%)
WD40 repeat 296..372 CDD:293791 15/82 (18%)
WD40 repeat 378..414 CDD:293791 10/41 (24%)
WD40 repeat 420..456 CDD:293791 10/42 (24%)
WD40 repeat 462..486 CDD:293791 6/23 (26%)
dyci-1NP_001370459.1 WD40 repeat 286..333 CDD:293791 11/54 (20%)
WD40 repeat 339..383 CDD:293791 7/47 (15%)
WD40 382..>611 CDD:421866 57/260 (22%)
WD40 repeat 388..457 CDD:293791 18/93 (19%)
WD40 repeat 487..528 CDD:293791 10/40 (25%)
WD40 repeat 534..573 CDD:293791 9/38 (24%)
WD40 repeat 581..609 CDD:293791 6/27 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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