DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG11835 and Cx3cl1

DIOPT Version :9

Sequence 1:NP_001259835.1 Gene:CG11835 / 33232 FlyBaseID:FBgn0031264 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_604450.2 Gene:Cx3cl1 / 89808 RGDID:620458 Length:393 Species:Rattus norvegicus


Alignment Length:274 Identity:78/274 - (28%)
Similarity:102/274 - (37%) Gaps:56/274 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 EKQVDKAKP-IEQTKTKESKVEHPKPAQKQLDQNTQAKPTAERSEAKPVVPTPEPQKSAPPAVQT 369
            ||:||...| |..|....|.....||....::..| .:|||...||:    .|......|||..|
  Rat   104 EKRVDNVTPRITSTTRGLSPTALAKPESATVEDLT-LEPTAISQEAR----RPMGTSQEPPAAVT 163

  Fly   370 LAQIVALPAEKPANEAVAAPKAEEQKKDSSGPAKVEPAITPSA----------PQPVTTAEPPKS 424
                .:.|:...|.:|..|  |:.|....|..|.|...|.||:          .:...|..||..
  Rat   164 ----GSFPSTSKAQDAGLA--AKPQSTGISEVAAVSTTIWPSSAVYQSGSSLWAEEKATESPPTI 222

  Fly   425 ALKQDSPPKSAPKQ-----GSPPKNVPKQESPPQSAPKQDSPPKGAPKQDSPPKGAPKQDSPPKG 484
            ||.......|:|||     |.||. |.:|:|.|:.:|        .|::.:|......||..|..
  Rat   223 ALSTQVSTTSSPKQNVGSEGQPPW-VQEQDSTPEKSP--------GPEETNPVHTDIFQDRGPGS 278

  Fly   485 APKQDSAP--QQKTPPPVKQEVAPAKQD---EPPAKQDAPPAKQDAPV-PVPEVIKTLAPEVPNV 543
            ......||  .:|||.|  :.||...|.   |.|....|.|.|....: |||:            
  Rat   279 TVHPSVAPTSSEKTPSP--ELVASGSQAPKVEEPIHATADPQKLSVFITPVPD------------ 329

  Fly   544 SQAPAQPQGQAALA 557
            |||..:.|....||
  Rat   330 SQAATRRQAVGLLA 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11835NP_001259835.1 NAC 38..91 CDD:280093
Cx3cl1NP_604450.2 Chemokine_CX3C 25..100 CDD:238172
Chemokine and involved in interaction with ITGAV:ITGB3 and ITGA4:ITGB1. /evidence=ECO:0000250|UniProtKB:P78423 25..100
Mucin-like stalk 101..337 75/266 (28%)
Herpes_BLLF1 <109..>334 CDD:282904 71/258 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..184 22/80 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..303 30/100 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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