DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG11835 and Cx3cl1

DIOPT Version :9

Sequence 1:NP_001259835.1 Gene:CG11835 / 33232 FlyBaseID:FBgn0031264 Length:795 Species:Drosophila melanogaster
Sequence 2:NP_033168.2 Gene:Cx3cl1 / 20312 MGIID:1097153 Length:395 Species:Mus musculus


Alignment Length:397 Identity:80/397 - (20%)
Similarity:130/397 - (32%) Gaps:124/397 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 AKVPETTNPSE---NPKEKQENKKGQAKNNKKGDPQTNKDKTNKSKDQAKGQPAPQANKETTQAA 250
            |.|.|||....   :||||......:..:::......|..|..|..|..    .|.....|...:
Mouse    62 AIVLETTQHRRFCADPKEKWVQDAMKHLDHQAAALTKNGGKFEKRVDNV----TPGITLATRGLS 122

  Fly   251 QALKQNPSKPAVQQKKDQVLAVDQKIEANGAIQKAQQPKPAETKSTDQKVEPKSAEKQVDKAKPI 315
            .:....|....::....::..:.|  ||.|.:..:|:|..|.|.|:                   
Mouse   123 PSALTKPESATLEDLALELTTISQ--EARGTMGTSQEPPAAVTGSS------------------- 166

  Fly   316 EQTKTKESKVEHPKPAQKQLDQNTQAKPTAERS-EAKPVVPTPEPQKSAPPAVQTLAQIVALPAE 379
              ..|.|::           |....|||.:..| ||..:..|..|.    |||.           
Mouse   167 --LSTSEAQ-----------DAGLTAKPQSIGSFEAADISTTVWPS----PAVY----------- 203

  Fly   380 KPANEAVAAPKAEEQKKDSSGPAKVEPAITPSAPQPVTTAEPPKSALKQDSPPKSAPKQGSPPKN 444
                ::.::..|||:..:|       |:.|..:||..||           ||       .:|.:|
Mouse   204 ----QSGSSSWAEEKATES-------PSTTAPSPQVSTT-----------SP-------STPEEN 239

  Fly   445 VPKQESPPQSAPKQDSPPKGAPKQDSPPKGAPKQDSPPKGAPKQDSAPQQKTPPPVKQEVAPAKQ 509
            |..:..||....:..||.|....::..|.....         .|:..|.....|    .|||...
Mouse   240 VGSEGQPPWVQGQDLSPEKSLGSEEINPVHTDN---------FQERGPGNTVHP----SVAPISS 291

  Fly   510 DEPPAKQDAPPAKQDAPVPVPEVIK--TLAPEVPNVSQAPAQPQGQAALASEKPADAPKAIEEPK 572
            :|.|:               ||::.  :.||::.....|.|.||..:.|.:..|        :.:
Mouse   292 EETPS---------------PELVASGSQAPKIEEPIHATADPQKLSVLITPVP--------DTQ 333

  Fly   573 AAPKKES 579
            ||.::::
Mouse   334 AATRRQA 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG11835NP_001259835.1 NAC 38..91 CDD:280093
Cx3cl1NP_033168.2 Chemokine_CX3C 25..100 CDD:238172 9/37 (24%)
Chemokine and involved in interaction with ITGAV:ITGB3 and ITGA4:ITGB1. /evidence=ECO:0000250|UniProtKB:P78423 25..100 9/37 (24%)
Mucin-like stalk 101..336 69/352 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 148..180 10/63 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..305 33/171 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.