DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tspo and tsp0

DIOPT Version :10

Sequence 1:NP_608531.1 Gene:Tspo / 33231 FlyBaseID:FBgn0031263 Length:185 Species:Drosophila melanogaster
Sequence 2:NP_001342775.1 Gene:tsp0 / 2541096 PomBaseID:SPBC725.10 Length:164 Species:Schizosaccharomyces pombe


Alignment Length:126 Identity:48/126 - (38%)
Similarity:63/126 - (50%) Gaps:0/126 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 YANLKFPSFKPPNSVFAPMWISLYAGMGYGSYLVWRDGGGFAGEAAKLPLIAYGTQLALNWAWTP 103
            |.|.|.|.|.||.|.|.|.|..||..|||.|:|.::........|::...|.|..|||.|:||.|
pombe    39 YENKKQPKFHPPASAFGPAWTLLYLTMGYASHLAYKADPLMITNASRNGSILYIAQLAANFAWMP 103

  Fly   104 IFFGQHNIKGGLIDIVALTAAASACGVLFYRVNKTAGLLFVPYVAWLGFATALNYAIWKLN 164
            :|:|....|..|.|:..||.........::.:..||....:||:||||:|..||.....||
pombe   104 LFYGLAKPKLALADLGILTGLVGWLAKTWWPLAPTASKWLIPYLAWLGYAGYLNLGYCLLN 164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TspoNP_608531.1 TspO_MBR 16..161 CDD:460795 46/121 (38%)
tsp0NP_001342775.1 TspO_MBR 18..162 CDD:460795 46/122 (38%)

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