DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rempA and rempA

DIOPT Version :10

Sequence 1:NP_995608.1 Gene:rempA / 33230 FlyBaseID:FBgn0260933 Length:1503 Species:Drosophila melanogaster
Sequence 2:XP_311215.4 Gene:rempA / 1272408 VectorBaseID:AGAMI1_005702 Length:1482 Species:Anopheles gambiae


Alignment Length:1544 Identity:782/1544 - (50%)
Similarity:1079/1544 - (69%) Gaps:109/1544 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSQ 65
            ||||||||::||||:|:||:|||||.||:|||||:|.|||||||||.|||.|.|||::|||.|||
Mosquito     1 MTLYFDTKVQFLDSEAISTVSSWHPVEPIFAVASYSNERGGSVTIFDDTGIPLRDVSFPVHPTSQ 65

  Fly    66 ATALCWHPEKALLASGWEHGDIHVWFAGHREFASVNAPHKAAIVLLQFSEQGGRMVTADAMGLVT 130
            ||.|.||||:.:|.:|||:|:||.||.|.|:|||||.|||:.|:||:|||:|||::||||||::|
Mosquito    66 ATVLTWHPERKILLTGWENGEIHAWFEGKRDFASVNGPHKSPIMLLEFSEKGGRVITADAMGVLT 130

  Fly   131 GWRCDGQYQFLTMFSHDLREVLLLICFRLTVESEVREEMANLAKAAVAGDENALDTLTNWRPRTA 195
            |||.|||.||||||:||||:.||.|.||.:::|...:|:.|||:|||||||.|||.||:||||||
Mosquito   131 GWRFDGQAQFLTMFNHDLRDPLLHITFRRSIQSASSKELTNLARAAVAGDEAALDQLTSWRPRTA 195

  Fly   196 ARSMTHSGVRDNHCFYACTQGGVVYYINQGGACVEVMKCGSLPPIVQMLWHPRKDAVICLMEDLT 260
            .|::.|:.|.||:|||||||.|::|||||.|.|.|::: |...||:|:||||::|:::.||||:|
Mosquito   196 VRNLAHASVHDNYCFYACTQAGILYYINQTGTCTEIVR-GDTIPIMQILWHPKQDSIVILMEDIT 259

  Fly   261 VTLFLVESTGILTELDRVKMSGRGGGRQGGIAW-SGNSLAIITGDFFVRIWDIERSDNYLLKMDL 324
            :..:.|::.|.:.||||||:||:..|.:..|.| :|.:|||:|||..|||||||.:|||:|.|:|
Mosquito   260 IGHYEVDTNGQIAELDRVKLSGKVSGSKSAITWVAGCALAILTGDLSVRIWDIETNDNYVLSMEL 324

  Fly   325 PSGNQPGSSMTTLSNGTMSSSNQFFSHDSSESSGVLRKTPKYGQLNGEMFTCLAYSSTGQTLCAG 389
            .:   .|:....::....:::.|                        |:|||:||.:..|||.||
Mosquito   325 TA---TGTDRPPVTGAAGAAAAQ------------------------EVFTCVAYCADTQTLSAG 362

  Fly   390 TSQGNVYTWKR-SGS--RLVGAPEDAWQLTNISSVRGAIRSCEWGYNELAKPCMLVNCLSNVFML 451
            |||||:|||:| :||  |.....|:.|||||::.|||.|:|..||..|..:.||:|||||:||:|
Mosquito   363 TSQGNLYTWRRAAGSYGRSYAGTENQWQLTNVTPVRGTIKSLVWGTTEANRACMMVNCLSSVFIL 427

  Fly   452 KEQPLLAVHTRELWAVQRSAKSVQLTHCSGREAIVQSEFAVTAMALSELSLVMSNGRSISSYSLQ 516
            |||.||:.|.|:|||.|:.:..:.:.|.:||||::.::.::..:||:||.||::|||:::.|.:.
Mosquito   428 KEQSLLSAHARQLWATQKKSNELLIRHANGREALLHTDISIIHLALNELHLVVTNGRTVAVYRID 492

  Fly   517 KVEKSLDEFEEILQTVEGTTPTTESTTTP--LSLKLLQTFAAECLALNLCNQNIFCLGSSDVFVY 579
            ..           .|:.||....::...|  |::..:.:||.||.|:.|..|:|..||:..|.:|
Mosquito   493 PA-----------GTMRGTRAGPDAGAEPDALAVSHVDSFAVECGAVYLYEQSIVALGTEQVKIY 546

  Fly   580 SVGGVVLHRIQASDIEGKIIGMDLSGCYLSVFTMNGYVKAYDVSRHDPKLLFPSKSGHDIFDDFG 644
            |:.|::|..:..:..|||.||:||.|.||:|||::||::.|||||||.:||.|.||.:|:|:.||
Mosquito   547 SLSGIILQELVFNANEGKPIGVDLVGPYLTVFTLHGYIRLYDVSRHDIRLLQPPKSAYDLFEKFG 611

  Fly   645 EFILVKCNSSGSHLAMVIASSNFTPISTLFCWDFERSNLL---EYGLLEPE------TNAKKESS 700
            |.|:.:.|::|:::|:.||:....|...|:.|:.| ||:|   |:...||.      .:.:.|.:
Mosquito   612 EIIMARTNANGTYVAITIANEQLLPDGKLYLWNLE-SNVLTAREFHTPEPSGRTRWLKDGQGEGA 675

  Fly   701 TS--------LPVRIFWDAEEPRLLATEVKSM--IQKTLPQKNSLQPSHFVQSKVVLLFY----S 751
            :|        |||..|||||:.||||.|.|.:  .|:...|..:|||    :|::.:||.    |
Mosquito   676 SSSAPNGHHCLPVAFFWDAEDARLLACETKPLPRQQQQQQQSRTLQP----ESQIHVLFVDAPKS 736

  Fly   752 EKGCLNVLETQSMSPG--CQLLNLCVPNVIRLKINTMEEQPLQDFVDLQQCNPVTRKQVLNFSLY 814
            |...|.:|:... :||  .:|:.||||::|.|:.|.:....|:||..|..|:..||:.||||||.
Mosquito   737 ELAELELLDPNG-APGEQLELIGLCVPHLIVLRRNEIARLSLRDFKGLDTCDLATREMVLNFSLN 800

  Fly   815 VAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVCMGHLEQARSVRALRQAIEDDDLET 879
            ||:.|||.|:..|||::|..:|.|||::||.|.||||||||:|||.:||||||||:|.||..||.
Mosquito   801 VAQENMDQAFSCIRSLRSDTVWANLARLCVQTGRLDVAKVCLGHLRRARSVRALRRATEDATLEQ 865

  Fly   880 EAKVAVLAIELGMIEEAKDLYRRCKRFDLLNKLLQSIGHLDEAVELAEAEDRIHLKHTYYQKAQE 944
            ||:||||||||||:|||:.||:||.|:||||||.|:.|..:||:|:||..||:||::||::.|:.
Mosquito   866 EARVAVLAIELGMMEEAEALYKRCGRYDLLNKLYQASGRFEEALEVAEHFDRVHLRNTYHRYAEW 930

  Fly   945 LRERGDIKGALEYFEKTQNPAQNITQLLLENPGAMKRYIQTTSDPKLLKWWGQYIESSGDMDAAL 1009
            |:|.|..:.|::|:|:|.:...||:|||:::|||:|:|:|.|:||:||:||.||:||||||:.|.
Mosquito   931 LKECGKTQKAIQYYERTTSLMHNISQLLMDDPGALKQYMQATTDPELLRWWAQYVESSGDMEGAF 995

  Fly  1010 AVYHKAEDWFSQVKILCYLGKISKADAIARQSGDRAACYHLARHYENVGKFQEAIMFFTRAQTFS 1074
            .:|.::.||||||:|||::|::::||.|||.||||||||||.|:|||.||.||||.|:|||||:.
Mosquito   996 KIYQRSGDWFSQVRILCFIGQVARADEIARASGDRAACYHLGRYYENSGKLQEAIQFYTRAQTYG 1060

  Fly  1075 NAIRICKENDFQEELWTVASSSRQRDKAIAAAYFEECGNFKHAVELYHRAGMLHKALEMAFESQQ 1139
            ||:|||||::..::|||||.::|.||||.||||:||.|:::.||||||||||||||:||||.|||
Mosquito  1061 NAVRICKEHELPDDLWTVACTARARDKASAAAYYEESGDYRRAVELYHRAGMLHKAVEMAFRSQQ 1125

  Fly  1140 PEILEIIASDLAPDSDAELINRCADFFCSIEQFQKAVHLLAKTRHLERALGICSEKGVPVTEELS 1204
            ||.|::|||:|...||.:|:.||||||..|||..|||.|||..|.|.|||.:|:|..|||||.|:
Mosquito  1126 PESLQVIASELDASSDPDLVGRCADFFVGIEQPYKAVQLLANARQLARALAVCAEHRVPVTETLA 1190

  Fly  1205 EMLTPEKGEFEEATRVHILVQLGEFLQQQGDYHSATKKFTQAGDKIRAMKSLLKSGNTDKIIFFA 1269
            |:|||.|.:..|..|..:|::||:.||:|||||:||||||||||::||||||||||:||||||||
Mosquito  1191 ELLTPGKDDLAEGERTALLLRLGDILQEQGDYHAATKKFTQAGDRVRAMKSLLKSGDTDKIIFFA 1255

  Fly  1270 NMSRQREVYIMAANYLQALDWQSDPQVLKHIVTFYTKGQAFDSLANFYAICAQIEIEEFQDYGKA 1334
            .||||::||:|||||||||:||||.::||:||||||||||:..||||||.|||.||:||:||.||
Mosquito  1256 GMSRQKDVYVMAANYLQALNWQSDAKILKNIVTFYTKGQAYSQLANFYANCAQAEIDEFRDYDKA 1320

  Fly  1335 LTAMQEASKCLEKLS------HAQHVYNNLQRTVADVKAILEIQQALREGDHQLVIGSCRSMLIK 1393
            |.|:|||.|.|.:.:      ......:.||..:|:|:.::|:|.|....::..||     .|||
Mosquito  1321 LNALQEAVKSLSRAAPGAAGGSQPAALDALQLAMAEVRRVIELQDATERQEYSNVI-----KLIK 1380

  Fly  1394 PEL-------PPIRHAHILAMLIRALVYVKDYSEAGRALKELTVKDSTWSASGLLDRSIVHKIAQ 1451
            ..|       ||:|...:||:|:..||....:|||...::||..:...|....|||::::.::..
Mosquito  1381 VRLEERQEPAPPVRVWDLLALLVECLVATGQHSEALYYVRELAQRKPDWYHQELLDKAVLDRLVA 1445

  Fly  1452 ECHLEFDLIWNAGRQVTASTSGTAATGMSSTSGMTTTDDDDADDEEITE 1500
            |..:..:...|. .:|...|:.|.:| ||             |||||.|
Mosquito  1446 ETGVNLEPYVNV-TKVKRPTTATIST-MS-------------DDEEIQE 1479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rempANP_995608.1 WD40 <13..147 CDD:441893 94/133 (71%)
WD40 repeat 67..103 CDD:293791 22/35 (63%)
WD40 repeat 108..144 CDD:293791 26/35 (74%)
WD40 repeat 153..202 CDD:293791 28/48 (58%)
WD40 repeat 222..276 CDD:293791 23/53 (43%)
WD40 repeat 288..312 CDD:293791 13/24 (54%)
BepA 813..927 CDD:443813 73/113 (65%)
TPR 871..1124 CDD:440225 151/252 (60%)
TPR repeat 937..973 CDD:276809 14/35 (40%)
TPR repeat 988..1039 CDD:276809 29/50 (58%)
TPR repeat 1044..1070 CDD:276809 19/25 (76%)
rempAXP_311215.4 WD40 <14..314 CDD:441893 186/300 (62%)
WD40 repeat 17..59 CDD:293791 31/41 (76%)
WD40 repeat 67..101 CDD:293791 20/33 (61%)
WD40 repeat 108..145 CDD:293791 27/36 (75%)
LapB 795..1096 CDD:442196 179/300 (60%)
TPR repeat 923..966 CDD:276809 17/42 (40%)
TPR repeat 974..1025 CDD:276809 29/50 (58%)
TPR repeat 1030..1056 CDD:276809 17/25 (68%)
TPR repeat 1069..1110 CDD:276809 25/40 (63%)
LapB 1204..1428 CDD:442196 124/236 (53%)

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