DRSC/TRiP Functional Genomics Resources

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Protein Alignment rempA and Ift140

DIOPT Version :9

Sequence 1:NP_995608.1 Gene:rempA / 33230 FlyBaseID:FBgn0260933 Length:1503 Species:Drosophila melanogaster
Sequence 2:NP_598887.3 Gene:Ift140 / 106633 MGIID:2146906 Length:1464 Species:Mus musculus


Alignment Length:1514 Identity:515/1514 - (34%)
Similarity:813/1514 - (53%) Gaps:151/1514 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSQ 65
            |.||||.:|:..|:.:..:..:|||:.|..||||.||..||:|.|:.:.|||..|.  .:..:.|
Mouse     1 MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDT--HIERSFQ 63

  Fly    66 ATALCWHPEKALLASGWEHGDIHVWFAGHREFASVNAPHKAAIVLLQFSEQGGRMVTADAMGLVT 130
            ||:|||||.:.:||.|||.|::.::....:|..:|..||...|.:|.:|..|..:|:.|.:|::.
Mouse    64 ATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLL 128

  Fly   131 GWRCD--GQYQFLTMFSHDLREVLLLICFRLTVESEVREEMANLAKAAVAGDENALDTLTNWRPR 193
            .||.|  |:.|...:..|:..:.|....|||....   |::..||||||:|||.||| :.||| :
Mouse   129 LWRLDQRGRVQGTPLLKHEYGKALTHCIFRLPPPG---EDLVQLAKAAVSGDEKALD-MFNWR-K 188

  Fly   194 TAARSMTHSGVRDNHCFYACTQGGVVYYINQGGACVEVMKCGSLPPIVQMLWH-PRKDAVICLME 257
            ::..|...:|.::...|:.....|.|:|:::.|...:|   .|....:|.|:: .|::|::.:.|
Mouse   189 SSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQV---ASTDSSIQTLFYIERREALVVVTE 250

  Fly   258 DLTVTLFLVESTGILTELDRVKMSGRGGGRQGGIAWSGNSLAIITGDFFVRIWDIERSDNYLLKM 322
            :|.::|::|...|...|:.:||:||:.|.|.......|:.|....|:..:|.||:||.:||:|.:
Mouse   251 NLLLSLYVVTPEGEAEEVMKVKLSGKTGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSL 315

  Fly   323 DLPSGNQPGSSMTTLSNGTMSSSNQFFSHDSSESSGVLRKTPKYGQLNGEMFTCLAYSSTGQTLC 387
            .                                        .|:|...||...|:.:......|.
Mouse   316 Q----------------------------------------EKFGFEKGESINCVCFCKAKGLLA 340

  Fly   388 AGTSQGNVYTWKR-----SGSRLVGAPEDAWQLTNISSVRGAIRSCEWGYNELAKPCMLVNCLSN 447
            |||::|.|..||:     :|....|  :|.|.|...:.:.|.|...:||..   |..:.|:...:
Mouse   341 AGTNKGRVAMWKKVPSFPNGRGAEG--KDMWALQTPTELEGNITQIKWGSR---KNLLAVSSTES 400

  Fly   448 VFMLKEQPLLAVHTRELWAVQRSAKSVQLTHCS-GREAIVQSEFAVTAMALSELSLVMSNGRSIS 511
            |.:|.||.:.:...:::.|||.|...|.::..| |....:.::..::.:..::.::.:.||:.::
Mouse   401 VSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVA 465

  Fly   512 SYSLQKVEKSLDEFEEILQTVEGTTPTTESTTTPLSLKLLQTFAAECLALNLCNQNIFCLGSSDV 576
            .:     |.|            |:|           |:...||..|...|.:..::|:.:..:.:
Mouse   466 IF-----EPS------------GST-----------LRNAGTFLCETSVLAMHEESIYTVEPNRL 502

  Fly   577 FVYSVGGVVLHRIQASDIEGKIIGMDLSGCYLSVFTMNGYVKAYDVSRHDPKLLFPSKSGHDIFD 641
            .|.:..|.|...:..|:.||....:|:.|.:|...|...:.|::|:||.:.|:....|:...:..
Mouse   503 QVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCKNLAQLVP 567

  Fly   642 DFGEFILVKCNSSGSHLAMVIASSNFTPISTLFCWDFERSNLLEYGLL-------------EPET 693
            |.|....::||::|:.::::::..|.:|.|.::.:|.|...:..:...             ||.|
Mouse   568 DVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQTLPFNEPPT 632

  Fly   694 N-----AKKESSTSLPVRIFWDAEEPRLLATEVKSMIQKTLPQKNSLQP------SHFVQSKVVL 747
            |     ..|..:...||..|||..||||...|.........||....||      .|..:..::.
Mouse   633 NETRSFMDKSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPRVEEGTCHKEEVLILS 697

  Fly   748 LFYSEK-GCLNVLETQSMSPGC--QLLNLCVPNVIRLK------------------INTMEEQPL 791
            .|.||: |.|  |......|..  .||.:.||:....|                  ...:.::||
Mouse   698 FFASEEHGFL--LHDSFPRPSTYQSLLGMEVPHYYFTKKPGEADKEDRVDSGYYHIPQMVAKRPL 760

  Fly   792 QDFVDLQQCNPVTRKQVLNFSLYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCVHTNRLDVAKVCM 856
            :|||.|:.|:..||..:||||.:|..|:||.|::||:.|:|:.:|.|:|:|||.|.||||||||:
Mouse   761 RDFVGLEDCDKSTRDAMLNFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCL 825

  Fly   857 GHLEQARSVRALRQAIEDDDLETEAKVAVLAIELGMIEEAKDLYRRCKRFDLLNKLLQSIGHLDE 921
            |::..||..||||:|.::.:|  ||:||:|||:|||:|||:.||::|||:|||||..|:.....:
Mouse   826 GNMGHARGARALREAEQEPEL--EARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFYQASDQWQK 888

  Fly   922 AVELAEAEDRIHLKHTYYQKAQELRERGDIKGALEYFEKTQNPAQNITQLLLENPGAMKRYIQTT 986
            |||:||..||:||:.|||..|:.|....|...||.|:||:......:.::|.|:..:::.||...
Mouse   889 AVEVAELHDRVHLRTTYYNYAKHLEASADCGQALSYYEKSDTHRFEVPRMLSEDLQSLELYINRM 953

  Fly   987 SDPKLLKWWGQYIESSGDMDAALAVYHKAEDWFSQVKILCYLGKISKADAIARQSGDRAACYHLA 1051
            .|..|.:||.||:||..:||.||..|..|:|:||.|:|.|:.|.|.||..||.::||.||.||||
Mouse   954 KDKTLWRWWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLA 1018

  Fly  1052 RHYENVGKFQEAIMFFTRAQTFSNAIRICKENDFQEELWTVASSSRQRDKAIAAAYFEECG-NFK 1115
            |.||:..:.::|:.|:||||.|:||||:||||...::|..:|..|...|...||.|:||.| ...
Mouse  1019 RQYESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEAARYYEEKGEQMD 1083

  Fly  1116 HAVELYHRAGMLHKALEMAFESQQPEILEIIASDLAPDSDAELINRCADFFCSIEQFQKAVHLLA 1180
            .||.|||:||...||||:||.:||...|::||.||...||..|:.||:||.....||:|||.||.
Mouse  1084 RAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIEHRQFEKAVELLL 1148

  Fly  1181 KTRHLERALGICSEKGVPVTEELSEMLTPEKG--EFEEATRVHILVQLGEFLQQQGDYHSATKKF 1243
            ..:....||.:|.|:.:.:||:::|.:|..|.  :..|.:|..:|.|:.....:||:||.||||:
Mouse  1149 AAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKDMSEESRRELLEQIANCCMRQGNYHLATKKY 1213

  Fly  1244 TQAGDKIRAMKSLLKSGNTDKIIFFANMSRQREVYIMAANYLQALDWQSDPQVLKHIVTFYTKGQ 1308
            ||||:|::||::|||||:|:||:|||.:|||:|:|||||||||:|||:.:|:::|.|::|||||:
Mouse  1214 TQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKEPEIMKSIISFYTKGR 1278

  Fly  1309 AFDSLANFYAICAQIEIEEFQDYGKALTAMQEASKCLEKLS-----HAQHVYNNLQRTVADVKAI 1368
            |.|.||.||..|||:||:|:|:|.||..|:.||.|||.|..     ..:.....||..:..||..
Mouse  1279 ALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKTKNPLDQETKLAQLQSKMTLVKRF 1343

  Fly  1369 LEIQQALREGDHQLVIGSCRSMLIKPEL-PPIRHAHILAMLIRALVYVKDYSEAGRALKELTVKD 1432
            ::.::...| |.:..:..|..:|.:|:| ..||...:...|:...|.:::|..|.:.|:|:..:.
Mouse  1344 IQARRTYTE-DPKESLRQCELLLEEPDLDSTIRVGDVYGFLVEHHVQMEEYQMAYKYLEEMRKRL 1407

  Fly  1433 STWSASGLLDRSIVHKIAQ 1451
            .:.:.|..:|:..|..:.|
Mouse  1408 PSANMSYYVDQRTVDTVHQ 1426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rempANP_995608.1 WD40 <14..123 CDD:295369 41/108 (38%)
WD40 repeat 67..103 CDD:293791 14/35 (40%)
WD40 71..480 CDD:225201 115/416 (28%)
WD40 repeat 108..144 CDD:293791 12/37 (32%)
WD40 repeat 153..202 CDD:293791 20/48 (42%)
WD40 repeat 222..276 CDD:293791 13/54 (24%)
WD40 repeat 288..312 CDD:293791 5/23 (22%)
TPR 860..1070 CDD:223533 96/209 (46%)
BRO1_Alix_like <901..1110 CDD:301330 92/208 (44%)
TPR repeat 937..973 CDD:276809 11/35 (31%)
TPR repeat 988..1039 CDD:276809 25/50 (50%)
TPR repeat 1044..1070 CDD:276809 12/25 (48%)
Ift140NP_598887.3 WD 1 4..48 19/43 (44%)
WD40 <13..>147 CDD:225201 49/135 (36%)
WD40 repeat 19..57 CDD:293791 18/39 (46%)
WD 2 51..90 17/40 (43%)
WD40 repeat 64..101 CDD:293791 15/36 (42%)
WD40 86..437 CDD:225201 108/403 (27%)
WD 3 93..132 12/38 (32%)
WD40 repeat 108..160 CDD:293791 15/51 (29%)
WD 4 139..188 22/53 (42%)
WD 5 221..259 10/40 (25%)
WD 6 266..305 12/38 (32%)
WD 7 322..361 11/38 (29%)
TPR 1. /evidence=ECO:0000255 772..808 16/35 (46%)
TPR 832..1092 CDD:223533 122/261 (47%)
TPR 2. /evidence=ECO:0000255 863..896 17/32 (53%)
TPR 3. /evidence=ECO:0000255 902..935 11/32 (34%)
TPR 4. /evidence=ECO:0000255 956..989 16/32 (50%)
TPR 5. /evidence=ECO:0000255 1011..1044 17/32 (53%)
Nic96 <1047..1228 CDD:367811 77/180 (43%)
TPR 6. /evidence=ECO:0000255 1079..1112 16/32 (50%)
TPR 7. /evidence=ECO:0000255 1124..1157 12/32 (38%)
TPR 8. /evidence=ECO:0000255 1190..1223 15/32 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837272
Domainoid 1 1.000 822 1.000 Domainoid score I62
eggNOG 1 0.900 - - E1_KOG3617
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40979
Inparanoid 1 1.050 822 1.000 Inparanoid score I467
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG56666
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005776
OrthoInspector 1 1.000 - - oto93230
orthoMCL 1 0.900 - - OOG6_104215
Panther 1 1.100 - - LDO PTHR15722
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3605
SonicParanoid 1 1.000 - - X4754
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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