DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rempA and Ift140

DIOPT Version :10

Sequence 1:NP_995608.1 Gene:rempA / 33230 FlyBaseID:FBgn0260933 Length:1503 Species:Drosophila melanogaster
Sequence 2:NP_001397246.1 Gene:Ift140 / 106633 MGIID:2146906 Length:1476 Species:Mus musculus


Alignment Length:1526 Identity:515/1526 - (33%)
Similarity:813/1526 - (53%) Gaps:163/1526 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTLYFDTKIEFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSQ 65
            |.||||.:|:..|:.:..:..:|||:.|..||||.||..||:|.|:.:.|||..|.  .:..:.|
Mouse     1 MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDT--HIERSFQ 63

  Fly    66 ATALCWHPEKALLASGWEHGDIHVWFAGHREFASVNAPHKAAIVLLQFSEQGGRMVTADAMGLVT 130
            ||:|||||.:.:||.|||.|::.::....:|..:|..||...|.:|.:|..|..:|:.|.:|::.
Mouse    64 ATSLCWHPTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLL 128

  Fly   131 GWRCD--GQYQFLTMFSHDLREVLLLICFRLTVESEVREEMANLAKAAVAGDENALDTLTNWRPR 193
            .||.|  |:.|...:..|:..:.|....|||....   |::..||||||:|||.||| :.||| :
Mouse   129 LWRLDQRGRVQGTPLLKHEYGKALTHCIFRLPPPG---EDLVQLAKAAVSGDEKALD-MFNWR-K 188

  Fly   194 TAARSMTHSGVRDNHCFYACTQGGVVYYINQGGACVEVMKCGSLPPIVQMLWH-PRKDAVICLME 257
            ::..|...:|.::...|:.....|.|:|:::.|...:|   .|....:|.|:: .|::|::.:.|
Mouse   189 SSFGSFLKTGSQEGLSFFVSLMDGTVHYVDEKGKTAQV---ASTDSSIQTLFYIERREALVVVTE 250

  Fly   258 DLTVTLFLVESTGILTELDRVKMSGRGGGRQGGIAWSGNSLAIITGDFFVRIWDIERSDNYLLKM 322
            :|.::|::|...|...|:.:||:||:.|.|.......|:.|....|:..:|.||:||.:||:|.:
Mouse   251 NLLLSLYVVTPEGEAEEVMKVKLSGKTGCRADITLIEGSLLVTAIGEPVLRFWDLERGENYILSL 315

  Fly   323 DLPSGNQPGSSMTTLSNGTMSSSNQFFSHDSSESSGVLRKTPKYGQLNGEMFTCLAYSSTGQTLC 387
            .                                        .|:|...||...|:.:......|.
Mouse   316 Q----------------------------------------EKFGFEKGESINCVCFCKAKGLLA 340

  Fly   388 AGTSQGNVYTWKR-----SGSRLVGAPEDAWQLTNISSVRGAIRSCEWGYNELAKPCMLVNCLSN 447
            |||::|.|..||:     :|....|  :|.|.|...:.:.|.|...:||..   |..:.|:...:
Mouse   341 AGTNKGRVAMWKKVPSFPNGRGAEG--KDMWALQTPTELEGNITQIKWGSR---KNLLAVSSTES 400

  Fly   448 VFMLKEQPLLAVHTRELWAVQRSAKSVQLTHCS-GREAIVQSEFAVTAMALSELSLVMSNGRSIS 511
            |.:|.||.:.:...:::.|||.|...|.::..| |....:.::..::.:..::.::.:.||:.::
Mouse   401 VSILSEQAMSSHFHQQVAAVQISPSLVNVSFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVA 465

  Fly   512 SYSLQKVEKSLDEFEEILQTVEGTTPTTESTTTPLSLKLLQTFAAECLALNLCNQNIFCLGSSDV 576
            .:     |.|            |:|           |:...||..|...|.:..::|:.:..:.:
Mouse   466 IF-----EPS------------GST-----------LRNAGTFLCETSVLAMHEESIYTVEPNRL 502

  Fly   577 FVYSVGGVVLHRIQASDIEGKIIGMDLSGCYLSVFTMNGYVKAYDVSRHDPKLLFPSKSGHDIFD 641
            .|.:..|.|...:..|:.||....:|:.|.:|...|...:.|::|:||.:.|:....|:...:..
Mouse   503 QVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCKNLAQLVP 567

  Fly   642 DFGEFILVKCNSSGSHLAMVIASSNFTPISTLFCWDFERSNLLEYGLL-------------EPET 693
            |.|....::||::|:.::::::..|.:|.|.::.:|.|...:..:...             ||.|
Mouse   568 DVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQTLPFNEPPT 632

  Fly   694 N-----AKKESSTSLPVRIFWDAEEPRLLATEVKSMIQKTLPQKNSLQP------SHFVQSKVVL 747
            |     ..|..:...||..|||..||||...|.........||....||      .|..:..::.
Mouse   633 NETRSFMDKSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPRVEEGTCHKEEVLILS 697

  Fly   748 LFYSEK-GCLNVLETQSMSPGC--QLLNLCVPNVIRLK--------------------------- 782
            .|.||: |.|  |......|..  .||.:.||:....|                           
Mouse   698 FFASEEHGFL--LHDSFPRPSTYQSLLGMEVPHYYFTKKLLFHRRGVYGAVPGEADKEDRVDSGY 760

  Fly   783 ---INTMEEQPLQDFVDLQQCNPVTRKQVLNFSLYVAEGNMDMAYRSIRSIQSKVIWTNLAKMCV 844
               ...:.::||:|||.|:.|:..||..:||||.:|..|:||.|::||:.|:|:.:|.|:|:|||
Mouse   761 YHIPQMVAKRPLRDFVGLEDCDKSTRDAMLNFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCV 825

  Fly   845 HTNRLDVAKVCMGHLEQARSVRALRQAIEDDDLETEAKVAVLAIELGMIEEAKDLYRRCKRFDLL 909
            .|.||||||||:|::..||..||||:|.::.:|  ||:||:|||:|||:|||:.||::|||:|||
Mouse   826 KTQRLDVAKVCLGNMGHARGARALREAEQEPEL--EARVAMLAIQLGMLEEAEQLYKKCKRYDLL 888

  Fly   910 NKLLQSIGHLDEAVELAEAEDRIHLKHTYYQKAQELRERGDIKGALEYFEKTQNPAQNITQLLLE 974
            ||..|:.....:|||:||..||:||:.|||..|:.|....|...||.|:||:......:.::|.|
Mouse   889 NKFYQASDQWQKAVEVAELHDRVHLRTTYYNYAKHLEASADCGQALSYYEKSDTHRFEVPRMLSE 953

  Fly   975 NPGAMKRYIQTTSDPKLLKWWGQYIESSGDMDAALAVYHKAEDWFSQVKILCYLGKISKADAIAR 1039
            :..:::.||....|..|.:||.||:||..:||.||..|..|:|:||.|:|.|:.|.|.||..||.
Mouse   954 DLQSLELYINRMKDKTLWRWWAQYLESQAEMDTALRYYELAQDYFSLVRIHCFQGNIQKAAEIAN 1018

  Fly  1040 QSGDRAACYHLARHYENVGKFQEAIMFFTRAQTFSNAIRICKENDFQEELWTVASSSRQRDKAIA 1104
            ::||.||.|||||.||:..:.::|:.|:||||.|:||||:||||...::|..:|..|...|...|
Mouse  1019 ETGDWAASYHLARQYESQDEVKQAVHFYTRAQAFNNAIRLCKENGLDDQLMNLALLSSPEDMIEA 1083

  Fly  1105 AAYFEECG-NFKHAVELYHRAGMLHKALEMAFESQQPEILEIIASDLAPDSDAELINRCADFFCS 1168
            |.|:||.| ....||.|||:||...||||:||.:||...|::||.||...||..|:.||:||...
Mouse  1084 ARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDEKSDPALLARCSDFCIE 1148

  Fly  1169 IEQFQKAVHLLAKTRHLERALGICSEKGVPVTEELSEMLTPEKG--EFEEATRVHILVQLGEFLQ 1231
            ..||:|||.||...:....||.:|.|:.:.:||:::|.:|..|.  :..|.:|..:|.|:.....
Mouse  1149 HRQFEKAVELLLAAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKDMSEESRRELLEQIANCCM 1213

  Fly  1232 QQGDYHSATKKFTQAGDKIRAMKSLLKSGNTDKIIFFANMSRQREVYIMAANYLQALDWQSDPQV 1296
            :||:||.||||:||||:|::||::|||||:|:||:|||.:|||:|:|||||||||:|||:.:|::
Mouse  1214 RQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDWRKEPEI 1278

  Fly  1297 LKHIVTFYTKGQAFDSLANFYAICAQIEIEEFQDYGKALTAMQEASKCLEKLS-----HAQHVYN 1356
            :|.|::|||||:|.|.||.||..|||:||:|:|:|.||..|:.||.|||.|..     ..:....
Mouse  1279 MKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKTKNPLDQETKLA 1343

  Fly  1357 NLQRTVADVKAILEIQQALREGDHQLVIGSCRSMLIKPEL-PPIRHAHILAMLIRALVYVKDYSE 1420
            .||..:..||..::.::...| |.:..:..|..:|.:|:| ..||...:...|:...|.:::|..
Mouse  1344 QLQSKMTLVKRFIQARRTYTE-DPKESLRQCELLLEEPDLDSTIRVGDVYGFLVEHHVQMEEYQM 1407

  Fly  1421 AGRALKELTVKDSTWSASGLLDRSIVHKIAQ 1451
            |.:.|:|:..:..:.:.|..:|:..|..:.|
Mouse  1408 AYKYLEEMRKRLPSANMSYYVDQRTVDTVHQ 1438

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rempANP_995608.1 WD40 <13..147 CDD:441893 49/135 (36%)
WD40 repeat 67..103 CDD:293791 14/35 (40%)
WD40 repeat 108..144 CDD:293791 12/37 (32%)
WD40 repeat 153..202 CDD:293791 20/48 (42%)
WD40 repeat 222..276 CDD:293791 13/54 (24%)
WD40 repeat 288..312 CDD:293791 5/23 (22%)
BepA 813..927 CDD:443813 60/113 (53%)
TPR 871..1124 CDD:440225 117/253 (46%)
TPR repeat 937..973 CDD:276809 11/35 (31%)
TPR repeat 988..1039 CDD:276809 25/50 (50%)
TPR repeat 1044..1070 CDD:276809 12/25 (48%)
Ift140NP_001397246.1 WD 1 4..48 19/43 (44%)
WD40 repeat 19..57 CDD:293791 18/39 (46%)
WD40 <24..133 CDD:441893 44/110 (40%)
WD 2 51..90 17/40 (43%)
WD40 repeat 64..101 CDD:293791 15/36 (42%)
WD 3 93..132 12/38 (32%)
WD40 repeat 108..160 CDD:293791 15/51 (29%)
WD 4 139..188 22/53 (42%)
WD 5 221..259 10/40 (25%)
WD 6 266..305 12/38 (32%)
WD 7 322..361 11/38 (29%)
TPR 1. /evidence=ECO:0000255 784..820 16/35 (46%)
BepA <795..886 CDD:443813 51/92 (55%)
LapB <847..1049 CDD:442196 94/203 (46%)
TPR 2. /evidence=ECO:0000255 875..908 17/32 (53%)
TPR 3. /evidence=ECO:0000255 914..947 11/32 (34%)
TPR 4. /evidence=ECO:0000255 968..1001 16/32 (50%)
TPR 5. /evidence=ECO:0000255 1023..1056 17/32 (53%)
TPR 6. /evidence=ECO:0000255 1091..1124 16/32 (50%)
TPR 7. /evidence=ECO:0000255 1136..1169 12/32 (38%)
TPR 8. /evidence=ECO:0000255 1202..1235 15/32 (47%)

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