Protein Alignment nAChRbeta3 and LOC798522

DIOPT Version :9

• Sequence 1: NP_525098.1
• Gene: nAChRbeta3 / 33228
• FlyBaseID: FBgn0031261
• Length: 441
• Species: Drosophila melanogaster
• Sequence 2: XP_001338964.6
• Gene: LOC798522 / 798522
• -ID: -
• Length: 488
• Species: Danio rerio
• Alignment Length: 386
• Identity: 105/386 - (27%)
• Similarity: 178/386 - (46%)
• Gaps: 40/386 - (10%)

  Fly    24 MGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPT-NVSLEMVVTYI- 86
            |.::|:....:..|:..|..:.|:     :|...|..:|.|.::||.....: ||:|::.::.|
Zfish     8 MEVMLLSALLLAEASHCAQGRFAH-----KLLNDLMEDYSSALRPVDDTDKSLNVTLQVTLSQIK 67

  Fly    87 DIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFN--GDEGGLMAET 149
            |:||.|..|..:.|:...|.|....|....||.:..|.:.||.:|.|.:.|:|  .|:.....:|
Zfish    68 DMDERNQVLIAYLWIRQVWHDAHLKWSKEDYDGLEVIRIPSSLIWRPDLVLYNKADDDFSGPVDT 132

  Fly   150 QVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGT----ARGE-SL 209
            .|.|.:.|...|..||:..:.|.:::..:|.|.|.|.|..|||      ..||.    |.|. |.
Zfish   133 NVVLRYTGEITWDAPAITKSSCVVDVSYFPFDSQQCNLTFGSW------TYNGNQVDIAMGSVSG 191

  Fly   210 DHDDLVQSPEWEIVDSRA------HFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALS 268
            |..|.|::.|||.....|      :....|.|..:.||:..|||||.|...:..|...|..||..
Zfish   192 DLSDFVENVEWECHGMPATKNVIMYGCCSDPYPDITYTVLLQRRSSFYIINLLLPCFLISFLAPL 256

  Fly   269 AFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLV 333
            :|:||.. .|||:.:...:::.:..|.|..|:.:|. |.:.||:..:|..::..::.||.:.:.:
Zfish   257 SFYLPAD-SGEKVSLGVTVLLALTVFQMMVAESMPP-SESVPLIAKYYIATMTMITASTALTIFI 319

  Fly   334 LYL-ATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQES 393
            :.: ..|...:.:|...:.|:..::..  :..|:. .|||.|.        |:.:|:|.||
Zfish   320 MNIHFCGAEAKPVPYWAKVLIIDYMSK--IFFVYE-VGESCAS--------PFGQAEESES 369

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nAChRbeta3	NP_525098.1	LIC	39..437	CDD:273305	102/371 (27%)
		Neur_chan_LBD	52..247	CDD:280998	62/209 (30%)
		Neur_chan_memb	255..434	CDD:280999	33/140 (24%)
LOC798522	XP_001338964.6	Neur_chan_LBD	32..477	CDD:332142	100/357 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	1	1.010	-	-		QHG48230
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	2	1.920