DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Htr3b

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_071525.1 Gene:Htr3b / 58963 RGDID:61820 Length:437 Species:Rattus norvegicus


Alignment Length:461 Identity:107/461 - (23%)
Similarity:189/461 - (40%) Gaps:74/461 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 MLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQ-GTPTNVSLEMVV-T 84
            :|...||:.:..:.| |||..|.|:   :|.||...|...|..:|:||:. ...|.|.|::.| .
  Rat     3 LLWSCLLVAVVGILG-TATPQPGNS---SLHRLTRQLLQQYHKEVRPVYNWAEATTVYLDLCVHA 63

  Fly    85 YIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAET 149
            .:|:|..|.||.|..|....|.||...|..|.:|:|.:|:|..|.:|.|.|.:      ....:.
  Rat    64 VLDVDVQNQKLKTSMWYREVWNDEFLSWNSSLFDDIQEISLPLSAIWAPDIII------NEFVDV 122

  Fly   150 Q-------VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGTARG- 206
            :       |.::..|..|...|....:.|.|....:|.|.|:|.|...|....|...:.|..|. 
  Rat   123 ERSPDLPYVYVNSSGTIRNHKPIQVVSACSLQTYAFPFDIQNCSLTFNSILHTVEDIDLGFLRNQ 187

  Fly   207 ESLDHD--DLVQSPEWEI--VDSRAHF--VSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVIL 265
            |.:::|  ..:...||::  |.|..|.  .|...:..:.:.:..:|....|...:..|:..::::
  Rat   188 EDIENDKRSFLNDSEWQLLSVTSTYHIRQSSAGDFAQIRFNVVIRRCPLAYVVSLLIPSIFLMLV 252

  Fly   266 ALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYST--SLLYLSVSTI 328
            .|.:|:|||:... :|:....:::....|.:..:..:|..:..|.|:.:|::.  :||.||:|..
  Rat   253 DLGSFYLPPNCRA-RIVFKTNVLVGYTVFRVNMSDEVPRSAGCTSLIGVFFTVCMALLVLSLSKS 316

  Fly   329 VEVLVLYLATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQES 393
            : :|:.:|...:|.    |..|.|:             ...|:|.|.:::.....|..|..|   
  Rat   317 I-LLIKFLYEERHS----EQERPLM-------------CLRGDSDANESRLYLRAPCAEDTE--- 360

  Fly   394 SPLGINHTEVPGAKANQF----------------------DWALLATAVDRISF-VSFSLAFLIL 435
            ||:...| :||......|                      :|..:....|::.| :..::..|..
  Rat   361 SPVRQEH-QVPSDTLKDFWFQLQSINNSLRTRDQVYQKEVEWLAILCHFDQLLFRIYLAVLGLYT 424

  Fly   436 AIRCSV 441
            ...||:
  Rat   425 VTLCSL 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 100/438 (23%)
Neur_chan_LBD 52..247 CDD:280998 54/210 (26%)
Neur_chan_memb 255..434 CDD:280999 38/203 (19%)
Htr3bNP_071525.1 LIC 30..431 CDD:273305 97/430 (23%)
Neur_chan_LBD 30..233 CDD:280998 54/208 (26%)
Neur_chan_memb 242..>313 CDD:280999 15/71 (21%)
HA-stretch 377..409 2/31 (6%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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