DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and chrna2b

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_697298.4 Gene:chrna2b / 568849 ZFINID:ZDB-GENE-041001-99 Length:550 Species:Danio rerio


Alignment Length:430 Identity:116/430 - (26%)
Similarity:192/430 - (44%) Gaps:74/430 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 ALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTY-------IDIDELNGKLTTHCWLNLRWRD 107
            |.|.|...||..|:...:||     .|.|..::|.:       ||:||.|..:||:.||...|.|
Zfish    34 AEDELFKKLFDGYNKWSRPV-----PNTSDVVIVKFGLSIAQLIDVDEKNQMMTTNVWLKQEWND 93

  Fly   108 EERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQVT---LSHDGHFRWMPPAVYTA 169
            .:..|:||.|||:|.|.:.|..:|.|.|.|:|..:|. .|.|.:|   |.|.|..||:|||:|.:
Zfish    94 YKLRWKPSDYDNVTSIRVPSELIWVPDIVLYNNADGE-FAVTHMTKAHLFHTGKVRWVPPAIYKS 157

  Fly   170 YCELNMLNWPHDKQSCKLKIGSW---GLKVVLP--ENGTARGESLDHDDLVQSPEWEIVDSRAHF 229
            .|.:::..:|.|:|:||:|.|||   ..|:.|.  ||      ::|..|..:|.||.|:::...:
Zfish   158 SCSIDVTFFPFDQQNCKMKFGSWTYDKAKIDLERIEN------TVDLKDYWESGEWAIINAVGTY 216

  Fly   230 VSQDY------YGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLI 288
            .::.|      |..:.|....:|....||..:..|...|..|.:..|:||... ||||.:...::
Zfish   217 NTKKYDCCHEIYPDITYFFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSDC-GEKITLCISVL 280

  Fly   289 IVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL---YLATGKHKRRLPEALR 350
            :.:..||:...:::|..|...||:..:...:::::::|.::.|.||   :.:...||  :|..:.
Zfish   281 LSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPSTHK--MPCWVH 343

  Fly   351 KLLHGHLGTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWAL 415
            .:....:..||.:                  ..|  ..|.:....|.:...:|||..|...: |.
Zfish   344 SVFLDLIPRWLFM------------------RRP--APDSRRRQKLLLLQRQVPGMTARPAN-AS 387

  Fly   416 LATAVD--------------RISFVSFSLAFLILAIRCSV 441
            |:|:..              ..|:....|..|..||..|:
Zfish   388 LSTSTSWFRGQNSGEDESCRHFSYKDLELGTLSSAISLSL 427

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 113/424 (27%)
Neur_chan_LBD 52..247 CDD:280998 71/215 (33%)
Neur_chan_memb 255..434 CDD:280999 37/195 (19%)
chrna2bXP_697298.4 LIC 6..543 CDD:273305 116/430 (27%)
Neur_chan_LBD 35..241 CDD:280998 72/217 (33%)
Neur_chan_memb 248..541 CDD:280999 41/204 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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