DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and chrne

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001314812.1 Gene:chrne / 445315 ZFINID:ZDB-GENE-040808-32 Length:517 Species:Danio rerio


Alignment Length:420 Identity:106/420 - (25%)
Similarity:182/420 - (43%) Gaps:52/420 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYIDIDELNGK---LTTHCWLNLRWRDEERVWQP 114
            :|.|..|.||..:::|. :.....|.:::.:|..::..||.|   |||:.|:.::|.|....|..
Zfish    31 QLIADKFKNYSKNIRPA-RHADEKVKVQVKLTLTNLISLNEKEETLTTNVWIEIQWHDYRLAWNT 94

  Fly   115 SQYDNITQITLKSSEVWTPQITLFNGDEG--GLMAETQVTLSHDGHFRWMPPAVYTAYCELNMLN 177
            |:|.:|.||.:....||.|.|.|.|..:|  .:.....|.:|.||...|:|||:|.:.|.:.:..
Zfish    95 SEYHDIEQIRVPYYTVWLPDIVLENNIDGKFDVAYYANVLISSDGSMYWLPPAIYRSTCAIEITY 159

  Fly   178 WPHDKQSCKLKIGSW-----GLKVVLPENGTAR---GESLDHDDLVQSPEWEIVDSRAHFVSQDY 234
            :|.|.|:|.|...|.     .:.:||.|:...:   ...:|.:...::.||.|....|..::...
Zfish   160 FPFDWQNCTLVFRSQTYSANEIDIVLAEDENGKPIEWVDIDPEAFTENGEWAIKHRPARKLTNQR 224

  Fly   235 YG-----YME--YTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIA 292
            |.     |.|  |.:..||:...|...|..|.|.|..|.:.|::||...||:|:.::..:::...
Zfish   225 YSPDDLEYQEVYYNIIIQRKPLFYVINIILPCSLISSLVVLAYFLPAKAGGQKLTVSISVLLAQT 289

  Fly   293 AFLMYFAQLLPVLSNNTPLV--VIFYSTSLLYLSVSTIVEVLVLYL---ATGKHKRRLPEALRKL 352
            .||:..:|.:|..|.:.||:  .:.:..|:..|.|:..:.||...|   :|....:.:.....::
Zfish   290 VFLILISQKIPETSLSVPLIGKYLIFVMSMTTLIVTNCIIVLNYSLRSPSTHNMSQSIKHIFLEV 354

  Fly   353 LHGHLGTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQESSPLGINH------TEVPGAKANQF 411
            :..:||              .|....|.|:....|..|:..|..|:..      .:.|.::. .|
Zfish   355 VPRYLG--------------MAPFVDEGDQGGVYEMRERRRSSFGLMQRAEEYVLKQPRSEM-MF 404

  Fly   412 D-----WALLATAVDRISFVSFSLAFLILA 436
            |     ..|:.|.||.|...|.:..:..||
Zfish   405 DKQRERHGLMRTIVDEIDVSSTANLYKSLA 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 106/420 (25%)
Neur_chan_LBD 52..247 CDD:280998 59/213 (28%)
Neur_chan_memb 255..434 CDD:280999 43/194 (22%)
chrneNP_001314812.1 LIC 10..495 CDD:273305 106/420 (25%)
Neur_chan_LBD 29..245 CDD:280998 60/214 (28%)
Neur_chan_memb 252..494 CDD:280999 45/198 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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