DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and chrnd

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_996947.1 Gene:chrnd / 404273 ZFINID:ZDB-GENE-030131-6665 Length:518 Species:Danio rerio


Alignment Length:470 Identity:112/470 - (23%)
Similarity:187/470 - (39%) Gaps:116/470 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 DRLHAGLF--TNYDSDVQPVFQGTPTNVSLEMVVT---YIDIDELNGKLTTHCWLNLRWRDEERV 111
            :||...||  ..|:.:::|| |.....|.:.:.:|   .|.:.|::..|.|:.|:...|:|....
Zfish    26 ERLINYLFKERGYNKELRPV-QNKDETVDIYLALTLSNLISLKEVDETLLTNVWMEHGWKDHRLT 89

  Fly   112 WQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQVT------LSHDGHFRWMPPAVYTAY 170
            |..|:|| |..:.|..|.||.|:|.|.|.::    |:.||.      :...|...|:|||::.:.
Zfish    90 WNESEYD-IPVLRLPPSMVWLPEIVLENNND----AQFQVAYYCNVLIYSSGDMYWLPPAIFRSS 149

  Fly   171 CELNMLNWPHDKQSCKLKIGSW-------GLKVVLPENGTARGE----SLDHDDLVQSPEWEIV- 223
            |.:|:..:|.|.|:|.||..|.       .|.:.:.:..|...:    .:|.:...::.||||| 
Zfish   150 CSINVNYFPFDWQNCSLKFSSLTYNAKEISLNLKMEQENTTYYKVEWIIIDPEGFTENGEWEIVH 214

  Fly   224 -------------DSRAHFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPH 275
                         :|..|   ||    :.:.|..:|:...|...|..|...|..||...::||..
Zfish   215 KPARRNIYKSIPKESNKH---QD----ITFYLIIKRKPLFYIVNIIIPCVLISFLASLVYYLPAD 272

  Fly   276 MGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGK 340
             .|||:.::..:::..:.||:..:|.||..|...||:|.:    |:::.|...|.||...:....
Zfish   273 -SGEKMTLSISVLLAQSVFLLLISQRLPETSMAVPLIVKY----LMFIMVLVTVVVLNCVIVLNL 332

  Fly   341 H-------------KRRLPEALRKLLH----------------------GHLGTWLLLSVFSTTG 370
            |             |....|.|.:|||                      |::..  ....:|...
Zfish   333 HFRTPSTHVMTEWTKEFFLERLPRLLHMSLPVEDQPVPESALPRRSSSLGYIAQ--AEEYYSVKS 395

  Fly   371 ESQAEKTKEMDEH----------PYEEADEQESSPLGINHTE--VPGAK--------ANQF---- 411
            .|:....|:.:.|          .|..:::.|.|....|..:  |.||.        .|.:    
Zfish   396 RSELMFEKQSERHGLAARPTPKATYTSSNDSEVSEQLYNEMKPAVEGANYIVKHMHDKNDYNEEK 460

  Fly   412 -DWALLATAVDRISF 425
             :|:.:|..|||:.|
Zfish   461 DNWSGIARTVDRLCF 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 112/470 (24%)
Neur_chan_LBD 52..247 CDD:280998 60/230 (26%)
Neur_chan_memb 255..434 CDD:280999 50/231 (22%)
chrndNP_996947.1 LIC 6..493 CDD:273305 112/470 (24%)
Neur_chan_LBD 25..245 CDD:280998 61/231 (26%)
Neur_chan_memb 252..490 CDD:280999 50/231 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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