DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Grd

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_524131.1 Gene:Grd / 39984 FlyBaseID:FBgn0001134 Length:686 Species:Drosophila melanogaster


Alignment Length:470 Identity:96/470 - (20%)
Similarity:169/470 - (35%) Gaps:114/470 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 MGMLLMGLTSVPGATATADPKNANV-KALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYI- 86
            ||..|.  :|:|.:..|....:||: :.||.|..|    ||:.::|.|.|.|..:.::::|..: 
  Fly    87 MGTSLS--SSLPSSWLTQSNNHANISELLDNLLRG----YDNSIRPDFGGPPATIEVDIMVRSMG 145

  Fly    87 DIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQ- 150
            .|.|::...:..|:....|.|:...::.:| |.:.......:.:|.|....:||.:..|...|. 
  Fly   146 PISEVDMTYSMDCYFRQSWVDKRLAFEGAQ-DTLALSVSMLARIWKPDTYFYNGKQSYLHTITTP 209

  Fly   151 ---VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGL---KVVL------PENGT 203
               |.:..:|...:.......|.|.:|:.::|.|.|.|.||.||:|.   .|:.      |....
  Fly   210 NKFVRIYQNGRVLYSSRLTIKAGCPMNLADFPMDIQKCPLKFGSFGYTTSDVIYRWNKERPPVAI 274

  Fly   204 ARGESLDHDDLVQSPEWEIVD----------SRAHFVSQD------------------------- 233
            |....|...|||..|...:.|          .|..|.::|                         
  Fly   275 AEDMKLSQFDLVDCPAGNLTDIVYKAAAPRPQRRPFNNKDPPRPTSKVMTTFAGPAAKNQHVRGT 339

  Fly   234 -------------------------------------YYGYMEYTLTAQRRSSMYTAVIYTPASC 261
                                                 .|..:......||....:...:|.|...
  Fly   340 GLKLDKGAFGTGRDATGGSGSTTGLSGTITLETNHPSEYSMLMVNFHLQRHMGNFLIQVYGPCCL 404

  Fly   262 IVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQL-LPVLSNNTPL-VVIFYSTSLLYLS 324
            :|:|:..:|||......:::.: |:..::...||...|:. ||.:|..|.| ..:|.|...::  
  Fly   405 LVVLSWVSFWLNREATADRVSL-GITTVLTMTFLGLEARTDLPKVSYPTALDFFVFLSFGFIF-- 466

  Fly   325 VSTIVEVLVLYLATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKEMDEHPYEEAD 389
             :||::..|::..|            |...|.. .:::..:.|.:|||:.|.... |.....|:.
  Fly   467 -ATILQFAVVHYYT------------KYGSGEC-YFIIEELDSESGESETEPLTS-DFRGSTESK 516

  Fly   390 EQESSPLGINHTEVP 404
            ..|..||.:....:|
  Fly   517 IYEVIPLSMCAISMP 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 91/455 (20%)
Neur_chan_LBD 52..247 CDD:280998 51/280 (18%)
Neur_chan_memb 255..434 CDD:280999 35/152 (23%)
GrdNP_524131.1 Neur_chan_LBD 110..326 CDD:280998 50/220 (23%)
LIC 111..670 CDD:273305 88/444 (20%)
Neur_chan_memb 398..667 CDD:280999 35/152 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447344
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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