DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta3 and chrna7a

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_957513.1 Gene:chrna7a / 394199 ZFINID:ZDB-GENE-040108-3 Length:509 Species:Danio rerio


Alignment Length:486 Identity:117/486 - (24%)
Similarity:202/486 - (41%) Gaps:120/486 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RLHAGLFTNYDSDVQPVFQGTPT-----NVSLEMVVTYIDIDELNGKLTTHCWLNLRWRDEERVW 112
            ||:..|..:|:...:|||..|.:     ::||..:   :|:||.|..|||:.||.|.|.|....|
Zfish    28 RLYRDLMKDYNPLERPVFNDTHSLTVYFSMSLMQI---MDVDEKNQVLTTNIWLQLYWYDYYLQW 89

  Fly   113 QPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMA--ETQVTLSHDGHFRWMPPAVYTAYCELNM 175
            ..|:|..:|.:....|::|.|.|.|:|..:....|  .|.|.::..|..:::||.::.:.|.:::
Zfish    90 NASEYPGVTNVRFPDSQIWKPDILLYNSADERFDATFHTNVLVNSSGACQYLPPGIFKSTCYIDV 154

  Fly   176 LNWPHDKQSCKLKIGSWGLKVVLPENGTARGESLDHDDL-------VQSPEWEIVD------SRA 227
            ..:|.|.|.|.||.|||          |..|.|||...:       :.:.||::|:      .|.
Zfish   155 RWFPFDLQRCDLKFGSW----------TYGGWSLDLQMIDADITGYIANGEWDLVEVPGRRNERF 209

  Fly   228 HFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIA 292
            :...::.|..:.:|:..:||:..|...:..|...|..|||..|.||.. .||||.:...:::.:.
Zfish   210 YDCCKEPYPDVTFTVVMRRRTLYYGLNLLIPCVLISTLALLVFLLPAD-SGEKISLGITVLLSLT 273

  Fly   293 AFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL----------------------- 334
            .|::..|:::|..|::.||:..:::|:::.:.:|.|..|.||                       
Zfish   274 VFMLLVAEIMPATSDSVPLIAQYFATTMVIVGLSVIATVWVLQYHYHDPEGGKMPKWTRVVLLNW 338

  Fly   335 ---YLATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKT---------KEMDEHPYEE 387
               :|   :.||...:.:|...|.......|.||........|:.|         :.||...|  
Zfish   339 CAWFL---RMKRPGEDKVRPACHNKQPRSSLSSVDLNISPGVAQSTNGNLLYIGFRGMDTIHY-- 398

  Fly   388 ADEQESSPL-------GINHTEVPGAKANQF---------------------------------- 411
            |...:|..:       |.....:|||:|:..                                  
Zfish   399 ATSPDSGVICSRLVATGEEDVLLPGAQASSVSSSGPGETELSKILDEVRYISKRFRDQDEEDTVC 463

  Fly   412 -DWALLATAVDRISFVSFSLAFLILAIRCSV 441
             :|...|:.:||:..::||| |.||   |::
Zfish   464 NEWKFAASVIDRLCLMAFSL-FTIL---CTI 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 116/480 (24%)
Neur_chan_LBD 52..247 CDD:280998 59/213 (28%)
Neur_chan_memb 255..434 CDD:280999 52/255 (20%)
chrna7aNP_957513.1 LIC 3..496 CDD:273305 117/486 (24%)
Neur_chan_LBD 26..230 CDD:280998 60/214 (28%)
Neur_chan_memb 237..492 CDD:280999 55/264 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000891
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.