DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and chrna7a

DIOPT Version :10

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_957513.1 Gene:chrna7a / 394199 ZFINID:ZDB-GENE-040108-3 Length:509 Species:Danio rerio


Alignment Length:486 Identity:117/486 - (24%)
Similarity:202/486 - (41%) Gaps:120/486 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RLHAGLFTNYDSDVQPVFQGTPT-----NVSLEMVVTYIDIDELNGKLTTHCWLNLRWRDEERVW 112
            ||:..|..:|:...:|||..|.:     ::||..:   :|:||.|..|||:.||.|.|.|....|
Zfish    28 RLYRDLMKDYNPLERPVFNDTHSLTVYFSMSLMQI---MDVDEKNQVLTTNIWLQLYWYDYYLQW 89

  Fly   113 QPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMA--ETQVTLSHDGHFRWMPPAVYTAYCELNM 175
            ..|:|..:|.:....|::|.|.|.|:|..:....|  .|.|.::..|..:::||.::.:.|.:::
Zfish    90 NASEYPGVTNVRFPDSQIWKPDILLYNSADERFDATFHTNVLVNSSGACQYLPPGIFKSTCYIDV 154

  Fly   176 LNWPHDKQSCKLKIGSWGLKVVLPENGTARGESLDHDDL-------VQSPEWEIVD------SRA 227
            ..:|.|.|.|.||.|||          |..|.|||...:       :.:.||::|:      .|.
Zfish   155 RWFPFDLQRCDLKFGSW----------TYGGWSLDLQMIDADITGYIANGEWDLVEVPGRRNERF 209

  Fly   228 HFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIA 292
            :...::.|..:.:|:..:||:..|...:..|...|..|||..|.||.. .||||.:...:::.:.
Zfish   210 YDCCKEPYPDVTFTVVMRRRTLYYGLNLLIPCVLISTLALLVFLLPAD-SGEKISLGITVLLSLT 273

  Fly   293 AFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL----------------------- 334
            .|::..|:::|..|::.||:..:::|:::.:.:|.|..|.||                       
Zfish   274 VFMLLVAEIMPATSDSVPLIAQYFATTMVIVGLSVIATVWVLQYHYHDPEGGKMPKWTRVVLLNW 338

  Fly   335 ---YLATGKHKRRLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKT---------KEMDEHPYEE 387
               :|   :.||...:.:|...|.......|.||........|:.|         :.||...|  
Zfish   339 CAWFL---RMKRPGEDKVRPACHNKQPRSSLSSVDLNISPGVAQSTNGNLLYIGFRGMDTIHY-- 398

  Fly   388 ADEQESSPL-------GINHTEVPGAKANQF---------------------------------- 411
            |...:|..:       |.....:|||:|:..                                  
Zfish   399 ATSPDSGVICSRLVATGEEDVLLPGAQASSVSSSGPGETELSKILDEVRYISKRFRDQDEEDTVC 463

  Fly   412 -DWALLATAVDRISFVSFSLAFLILAIRCSV 441
             :|...|:.:||:..::||| |.||   |::
Zfish   464 NEWKFAASVIDRLCLMAFSL-FTIL---CTI 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:455710 116/480 (24%)
chrna7aNP_957513.1 LIC 3..496 CDD:455710 117/486 (24%)

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