DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Rdl

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:417 Identity:84/417 - (20%)
Similarity:162/417 - (38%) Gaps:70/417 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 APVSGPGLPLL-LQMLMGMLLMG-------LTSVPGATATADP-KNANVKA-LDRLHAGLFTNYD 63
            ||:  |..||| :.:.:.|.|:.       :.:|..||..... .:.|:.| ||    ....:||
  Fly    13 APL--PRTPLLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILD----SFSVSYD 71

  Fly    64 SDVQPVFQGTPTNVSLEMVVTYI-DIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKS 127
            ..|:|.:.|.|..|.:.|.|..| .:.|:....|...:....|.|....::  :...:..:::.|
  Fly    72 KRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYR--KRPGVETLSVGS 134

  Fly   128 ---SEVWTPQITLFNGDEGGLMAETQ----VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSC 185
               ..:|.|.....|..:......|.    :.:.|.|..........||.|.:|:..:|.|:|.|
  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199

  Fly   186 KLKIGSWG-----LKVVLPENGTARGESLDHDDLVQSPEWEIVDSRAHF----VSQDYYGYMEYT 241
            .::|.|:|     ::....:..::.|.|.:    |:.|::.::..|...    ::...|..:...
  Fly   200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSE----VELPQFRVLGHRQRATEINLTTGNYSRLACE 260

  Fly   242 LTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLS 306
            :...|....|...||.|:..|||::..:|||..:....::.: |:..::....||        .|
  Fly   261 IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVAL-GVTTVLTMTTLM--------SS 316

  Fly   307 NNTPLVVIFYSTSL-LYLSVSTIV--EVLVLYLATGKHKRRLPEALRKLLHGHLGTWLLLSVFST 368
            .|..|..|.|..|: :||....::  ..|:.|...|...:|:....::.:               
  Fly   317 TNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFM--------------- 366

  Fly   369 TGESQAEKTKEMDEHPYEEADEQESSP 395
                ..:|..|..:...:.|::|:::|
  Fly   367 ----AIQKIAEQKKQQLDGANQQQANP 389

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 73/379 (19%)
Neur_chan_LBD 52..247 CDD:280998 39/211 (18%)
Neur_chan_memb 255..434 CDD:280999 29/144 (20%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 32/188 (17%)
Neur_chan_memb 274..588 CDD:397193 29/144 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447347
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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