DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and lgc-8

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001023533.2 Gene:lgc-8 / 3564870 WormBaseID:WBGene00013338 Length:438 Species:Caenorhabditis elegans


Alignment Length:378 Identity:96/378 - (25%)
Similarity:158/378 - (41%) Gaps:68/378 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 MLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPT---NVSLEMVVTYID 87
            ::|..|..:.|.|.:...|:.           |...|||.::||.....|   |:|:.. ::::.
 Worm    14 LILWNLLEIDGITVSEQLKDV-----------LMEGYDSSIRPVINERDTLFINISINS-MSFLT 66

  Fly    88 IDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQ-- 150
            :|.....:.......|:|:||...|..|.| |||.:.||.|.:|||..|:....:...:.||.  
 Worm    67 LDPAEETINFSGEFILQWKDEFLFWNKSDY-NITWLKLKESFLWTPDTTVSTSIDTNYLIETSER 130

  Fly   151 -VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWG--LKVV-------LPEN---G 202
             |::.:||..|....||:|..|::|:..:|:|:|:|.:|:|.|.  :|.|       :..|   |
 Worm   131 YVSVKYDGTVRQNIYAVFTNLCDMNINEFPYDQQTCMIKMGPWSYTMKEVTCIVGGDIERNETTG 195

  Fly   203 TARGES-LDHDDLVQS------PEWEIVDSRAHFVSQDYYGYMEYTLTAQRRSSMYTAVIYTPAS 260
            ..:|.| .|.:.:|.|      |:.....|..||           .||.:||...|..|:..|..
 Worm   196 KFQGNSEWDFEGIVSSVGETEDPDVNFTFSEVHF-----------ALTVKRRPQFYVWVLLIPTY 249

  Fly   261 CIVILALSAFWLPPHMGG---EKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLY 322
            .|.::.:...:.|....|   |::.:....::..|..|...|..:|..| ..||:..|....:..
 Worm   250 IITVVCIFGLFTPTANHGLREERVNLGITTLLSSAVILQIVANAMPKTS-ELPLLGNFILAEIFV 313

  Fly   323 LSVSTIVEVLVLYLATGKHKR--RLPEALRKLLHGHLGTWLLLSVFSTTGESQ 373
            :::..:..||||.|....|.|  |.|            .|:|. :...||.|:
 Worm   314 VAIGVLFAVLVLTLHQRAHTREWRPP------------AWMLW-ILRMTGSSK 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 92/365 (25%)
Neur_chan_LBD 52..247 CDD:280998 60/219 (27%)
Neur_chan_memb 255..434 CDD:280999 27/124 (22%)
lgc-8NP_001023533.2 Neur_chan_LBD 29..237 CDD:280998 62/231 (27%)
Neur_chan_memb 244..>348 CDD:280999 24/117 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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