DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrne

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_017452660.1 Gene:Chrne / 29422 RGDID:2353 Length:547 Species:Rattus norvegicus


Alignment Length:501 Identity:110/501 - (21%)
Similarity:186/501 - (37%) Gaps:144/501 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 TATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYIDIDELNGK---LTTHC 99
            |..:..||..:.    |:..||.|||.:.:||.:...| |::.:.||..::..||.|   |||..
  Rat    68 TGRSQGKNEELS----LYHHLFDNYDPECRPVRRPEDT-VTITLKVTLTNLISLNEKEETLTTSV 127

  Fly   100 WLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEG--GLMAETQVTLSHDGHFRWM 162
            |:.:.|:|....:....:..:..:.:.|..||.|:|.|.|..:|  |:..:..|.:...|...|:
  Rat   128 WIGIEWQDYRLNFSKDDFAGVEILRVPSEHVWLPEIVLENNIDGQFGVAYDCNVLVYEGGSVSWL 192

  Fly   163 PPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKV-------VLPENGTARGE-SLDHDDLVQSPE 219
            |||:|.:.|.:.:..:|.|.|:|.|...|.....       .:.::|.|..: .:|.....::.|
  Rat   193 PPAIYRSTCAVEVTYFPFDWQNCSLIFRSQTYNAEEVEFIFAVDDDGNAINKIDIDTAAFTENGE 257

  Fly   220 WEIVDSRAHFVSQDYY---------GYME--------YTLTAQRRSSMYTAVIYTPASCIVI--L 265
            |.|          ||.         |..|        |||..:|:...|...|..|  |::|  |
  Rat   258 WAI----------DYCPGMIRHYEGGSTEDPGETDVIYTLIIRRKPLFYVINIIVP--CVLISGL 310

  Fly   266 ALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTP-----LVVIFYSTSLLYLSV 325
            .|.|::||...||:|..::..:::....||...||.:|..|.:.|     |:.:....:|:.::.
  Rat   311 VLLAYFLPAQAGGQKCTVSINVLLAQTVFLFLIAQKIPETSLSVPLLGRYLIFVMVVATLIVMNC 375

  Fly   326 STIVEVLVLYLATGKHKRRLPEALRKLL------------------------------------- 353
            ..::.|.:....|.....||.:.|.:||                                     
  Rat   376 VIVLNVSLRTPTTHATSPRLRQILLELLPRLLGLSPPPEDPGAASPARRASSVGILLRAEELILK 440

  Fly   354 ------------HGHLGTWLLLSVFSTTGESQ-------------AEKTKEMDEHPYEEADEQES 393
                        |.| |||...::......:.             ||.|::      :||..:|.
  Rat   441 KPRSELVFEGQRHRH-GTWTAAALCQNLSAAAPEVRCCVDAVNFVAESTRD------QEATGEEL 498

  Fly   394 SPLGINHTEVPGAKANQFDWALLATAVDRISF----VSFSLAFLIL 435
            |                 ||..:..|:|.:.|    |.||:...::
  Rat   499 S-----------------DWVRMGKALDNVCFWAALVLFSVGSTLI 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 109/500 (22%)
Neur_chan_LBD 52..247 CDD:280998 57/224 (25%)
Neur_chan_memb 255..434 CDD:280999 48/251 (19%)
ChrneXP_017452660.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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