Sequence 1: | NP_525098.1 | Gene: | nAChRbeta3 / 33228 | FlyBaseID: | FBgn0031261 | Length: | 441 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_434692.2 | Gene: | Chrna3 / 25101 | RGDID: | 2345 | Length: | 499 | Species: | Rattus norvegicus |
Alignment Length: | 520 | Identity: | 117/520 - (22%) |
---|---|---|---|
Similarity: | 211/520 - (40%) | Gaps: | 141/520 - (27%) |
- Green bases have known domain annotations that are detailed below.
Fly 16 LPLLLQMLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPTNVSLE 80
Fly 81 MVVTY-------IDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLF 138
Fly 139 NGDEGGLMAE--TQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWG-----LKV 196
Fly 197 VLPENGTARGESLDHDDLVQSPEWEIVDSRA--HFVS----QDYYGYMEYTLTAQRRSSMYTAVI 255
Fly 256 YTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSL 320
Fly 321 LYLSVSTIVEVLVL---YLATGKHKRRLPEALRKLLHGHLGTWLLLSVF------------STTG 370
Fly 371 ESQAEKTK--------------EMDEHPYEEADEQESSPLGINH---TEVPGAKAN--------- 409
Fly 410 -------------------------------------QFDWALLATAVDRISFVSFSLAFLILAI 437
Fly 438 437 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta3 | NP_525098.1 | LIC | 39..437 | CDD:273305 | 107/495 (22%) |
Neur_chan_LBD | 52..247 | CDD:280998 | 57/214 (27%) | ||
Neur_chan_memb | 255..434 | CDD:280999 | 45/256 (18%) | ||
Chrna3 | NP_434692.2 | LIC | 24..490 | CDD:273305 | 108/498 (22%) |
Neur_chan_LBD | 29..235 | CDD:280998 | 58/216 (27%) | ||
Neur_chan_memb | 242..489 | CDD:280999 | 46/261 (18%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR18945 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.910 |