DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and pbo-6

DIOPT Version :10

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001294833.1 Gene:pbo-6 / 24104421 WormBaseID:WBGene00017375 Length:422 Species:Caenorhabditis elegans


Alignment Length:20 Identity:9/20 - (45%)
Similarity:13/20 - (65%) Gaps:0/20 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 VDVNQSKDPEGLRGFYYLVQ 129
            |.:|::..|.|.||..:|||
 Worm    50 VTLNETFTPPGGRGTCHLVQ 69

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:455710 9/20 (45%)
pbo-6NP_001294833.1 Neur_chan_LBD 31..230 CDD:460752 9/20 (45%)
LGIC_TM_cation 231..>322 CDD:349853
TM1 helix 231..259 CDD:349853
TM2 helix 267..288 CDD:349853
TM3 helix 299..321 CDD:349853
Blue background indicates that the domain is not in the aligned region.

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