DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and Chrna9

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001074573.1 Gene:Chrna9 / 231252 MGIID:1202403 Length:479 Species:Mus musculus


Alignment Length:350 Identity:101/350 - (28%)
Similarity:169/350 - (48%) Gaps:37/350 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 KNANVKALDRLHAGLFTNYDSDVQPVFQGTPT--NVSLEMVVTYI-DIDELNGKLTTHCWLNLRW 105
            :.||.|...:|.:.||.:|.:.::|| :.|..  ||:|::.::.| |:||.|..||.:.|:...|
Mouse    24 ETANGKYAQKLFSDLFEDYSNALRPV-EDTDAVLNVTLQVTLSQIKDMDERNQILTAYLWIRQTW 87

  Fly   106 RDEERVWQPSQYDNITQITLKSSEVWTPQITLFN--GDEGGLMAETQVTLSHDGHFRWMPPAVYT 168
            .|....|...|||.:..|.:.|..||.|.|.|:|  .||......|.|.|.:||...|..||:..
Mouse    88 HDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLYNKADDESSEPVNTNVVLRYDGLITWDSPAITK 152

  Fly   169 AYCELNMLNWPHDKQSCKLKIGSWGLKVVLPENGTARG---------ESLDHDDLVQSPEWEIVD 224
            :.|.:::..:|.|.|.|.|..|||          |..|         :|.|..|.::..|||:..
Mouse   153 SSCVVDVTYFPFDSQQCNLTFGSW----------TYNGNQVDIFNALDSGDLSDFIEDVEWEVQG 207

  Fly   225 SRA--HFVS----QDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMI 283
            ..|  :.:|    .:.|..:.:||..:||||.|...:..|...|..||..:|:||. ..|||:.:
Mouse   208 MPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPA-ASGEKVSL 271

  Fly   284 NGLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYL-ATGKHKRRLPE 347
            ...:::.:..|.:..|:::|. |.|.||:..:|..::..::.||.:.::|:.: ..|...|.:|.
Mouse   272 GVTILLAMTVFQLMVAEIMPA-SENVPLIGKYYIATMALITASTALTIMVMNIHFCGAEARPVPH 335

  Fly   348 ALRKLLHGHLGTWLLLSVFSTTGES 372
            ..:.::..::..  :|.|:. .|||
Mouse   336 WAKVVILKYMSR--ILFVYD-VGES 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 100/349 (29%)
Neur_chan_LBD 52..247 CDD:280998 64/214 (30%)
Neur_chan_memb 255..434 CDD:280999 28/118 (24%)
Chrna9NP_001074573.1 LIC 10..474 CDD:273305 100/349 (29%)
Neur_chan_LBD 31..236 CDD:280998 64/215 (30%)
Neur_chan_memb 244..474 CDD:280999 28/118 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48230
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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