DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and acr-23

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_504024.2 Gene:acr-23 / 191606 WormBaseID:WBGene00000062 Length:545 Species:Caenorhabditis elegans


Alignment Length:541 Identity:101/541 - (18%)
Similarity:205/541 - (37%) Gaps:147/541 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 MLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFTNYDSDVQP-VFQGTPTNVSLEM-VVT 84
            :.:..|.:||::           |.::.....|...:..||...:.| |.:|:|.||:|.: :..
 Worm     9 IFISQLALGLSN-----------NPDIPIQYELANNIMENYQKGLIPKVRKGSPINVTLSLQLYQ 62

  Fly    85 YIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNG---DEGGLM 146
            .|.::|....|..:.|...||.|:...|.||::||.|:|..:..::|.|..||:|.   |:....
 Worm    63 IIQVNEPQQYLLLNAWAVERWVDQMLGWDPSEFDNETEIMARHDDIWLPDTTLYNSLEMDDSASK 127

  Fly   147 AETQVTLSHDGH-----FRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSWGLKVVLPE------ 200
            ..|.|.|:..|.     ...:.|.:|...|.||:..:|.|.|:|::..|||.....|.:      
 Worm   128 KLTHVKLTTLGKNQGAMVELLYPTIYKISCLLNLKYFPFDTQTCRMTFGSWSFDNSLIDYFPRTF 192

  Fly   201 -NGTARGESLDHDDLVQSPEWEIVDSRAHFVSQDY------YGYMEYTLTAQRRSSMYTAVIYTP 258
             ||     .:...:.:::..|.::.::.:...:.|      |..:.|.:..||:...|...:..|
 Worm   193 TNG-----PIGLANFLENDAWSVLGTKVNREEKKYTCCPVNYTLLHYDVVIQRKPLYYVLNLIAP 252

  Fly   259 ASCIVILALSAFWLPPH--------------MGGEKIMINGLLIIVIAAFLMYFAQLLPVLSNNT 309
            .:.|..:::..|:...:              :..|||.:....::.::..:...:..:|..|...
 Worm   253 TAVITFISIIGFFTSVNPFTNFCNVSSSVHDLRQEKITLGITTLLSMSIMIFMVSDKMPSTSTCV 317

  Fly   310 PLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRL-----PEALRKLLHGH-LGTWLLLSVFST 368
            ||:.:||:..:..:||.|:....|:::      ::|     |.|.:.:...| :..::|:.:...
 Worm   318 PLIALFYTLMITIISVGTLAASSVIFV------QKLGSIGNPPASKTMKWTHRIAPFVLIQMPLV 376

  Fly   369 TGESQAEKTKE---------------------------MDEHP---------------------- 384
            ..::.|::.||                           |:..|                      
 Worm   377 MKQAYAKRAKEEKHRKRMSRKNSMWTKVYHLARDHSKLMETVPDGAVKFNQISDFKNNDIGNMES 441

  Fly   385 ----YEEADEQESSPLGINHTE---VPG----AKAN----------------------QFDWALL 416
                ..:..|..::|:..:.||   :|.    |.:|                      :.:|..:
 Worm   442 PRMAESQTSETFAAPMDTSFTESLHIPELNRVASSNSIQSVLKPTEIQLTPYCTRNIVELEWDWV 506

  Fly   417 ATAVDRISFVSFSLAFLILAI 437
            |..::|:..:.|::.||..||
 Worm   507 AAVLERVFLIFFTICFLFSAI 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 96/522 (18%)
Neur_chan_LBD 52..247 CDD:280998 54/217 (25%)
Neur_chan_memb 255..434 CDD:280999 38/280 (14%)
acr-23NP_504024.2 Neur_chan_LBD 27..242 CDD:280998 55/219 (25%)
Neur_chan_memb 249..529 CDD:280999 41/285 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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