DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta3 and acr-19

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_001129756.1 Gene:acr-19 / 191605 WormBaseID:WBGene00000058 Length:560 Species:Caenorhabditis elegans


Alignment Length:537 Identity:120/537 - (22%)
Similarity:197/537 - (36%) Gaps:177/537 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 RLHAGLFTNYDSDVQPVFQGTPTNVSLEMVV-------TYIDIDELNGKLTTHCWLNLRWRDEER 110
            ||:|.|..||:...:||     .|.|..:||       ..:||||.:..:.::.||.:.|.|...
 Worm    33 RLYAKLAENYNKLARPV-----RNESEAVVVLLGMDYQQILDIDEKHQIMNSNVWLRMSWTDHYL 92

  Fly   111 VWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQV--TLSHDGHFRWMPPAVYTAYCEL 173
            .|.||::.||.::.|..:.:|.|.:.|:|..:....:...|  .:.:.|:..|:|||:..:.|.:
 Worm    93 TWDPSEFGNIKEVRLPINNIWKPDVLLYNSVDQQFDSTWPVNAVVLYTGNVTWIPPAIIRSSCAI 157

  Fly   174 NMLNWPHDKQSCKLKIGSWGLKVVLPENGTARGESLDHDDLVQSP-------EWEIV---DSRAH 228
            ::..:|.|.|.|.:|.|||          |..|...|..:...||       |||::   ..|:.
 Worm   158 DIAYFPFDTQHCTMKFGSW----------TYSGFFTDLINTTISPATYKPNGEWELLGLTSQRSI 212

  Fly   229 F----VSQDYYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLII 289
            |    ..:.||. :.:|::.:||:..|...:..|...|..|||.:|.||... |||:.:...:.:
 Worm   213 FFYECCPEPYYD-VTFTVSIRRRTLYYGFNLLLPCMLISSLALLSFTLPADC-GEKLNLGVTIFM 275

  Fly   290 VIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEA------ 348
            .:..|::..|:.:|..|:..||:.|::|..:..:..|.:..|:.|     ....|.||.      
 Worm   276 SLCVFMIMVAEAMPQTSDALPLIQIYFSCIMFQVGASVVATVIAL-----NFHHRSPEQYKPMNK 335

  Fly   349 -LRKLLHGHLGTWL-----------------------------------LLSVFSTTGESQAEKT 377
             |:.||.|.|.|.|                                   :|:..:..|.|..:|.
 Worm   336 FLKTLLLGWLPTLLGMERPDVLELSVHGAHYASDNKKKQRQYLIEVERHILTRPNGNGHSAVDKA 400

  Fly   378 KEMD---EHPYEEADEQESSP-------LG----------------------------------- 397
            ..:|   .:|:.:|.:...||       :|                                   
 Worm   401 VHLDLSTGNPHSDAKKSSPSPKRTSASIMGMTGLPTTQMNGALDSSINKYTCTKVTRPLENGSAT 465

  Fly   398 INHTEVP--------------------------------------------GAKANQFDWALLAT 418
            |||...|                                            ...|.|.||...:.
 Worm   466 INHKSSPQINPINNNNIYKCANNQKTQFEDRHFHHILNELRVISARVRKEEAMHALQADWMFASR 530

  Fly   419 AVDRISFVSFSLAFLIL 435
            .|||:.|::|| |||.:
 Worm   531 VVDRVCFLAFS-AFLFM 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 120/537 (22%)
Neur_chan_LBD 52..247 CDD:280998 58/216 (27%)
Neur_chan_memb 255..434 CDD:280999 58/309 (19%)
acr-19NP_001129756.1 LIC 31..548 CDD:273305 120/537 (22%)
Neur_chan_LBD 31..235 CDD:280998 59/217 (27%)
Neur_chan_memb 242..>354 CDD:280999 32/117 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000891
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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