| Sequence 1: | NP_525098.1 | Gene: | nAChRbeta3 / 33228 | FlyBaseID: | FBgn0031261 | Length: | 441 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_510024.2 | Gene: | lgc-14 / 187972 | WormBaseID: | WBGene00011355 | Length: | 400 | Species: | Caenorhabditis elegans |
| Alignment Length: | 361 | Identity: | 71/361 - (19%) |
|---|---|---|---|
| Similarity: | 144/361 - (39%) | Gaps: | 89/361 - (24%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 48 VKALDRLHAGLFTNYDSDVQPVFQ------------GTPTNVSLEMVVTYIDIDELN---GKLTT 97
Fly 98 HCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQ------VTLSHD 156
Fly 157 GHFRWMPPAVYTAYCELNMLNWPHDKQSCKLK------------------IGSWGLKVVLPENGT 203
Fly 204 ARGESLDHDDLVQSPEWEI--VDSRAHFVS-QDYYGYME---YTLTAQRRSSMYTAVIYTPASCI 262
Fly 263 VILALSAFWLPPHMGGEKI-MIN-GLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSV 325
Fly 326 STIVEVLVLYLATGKHKRRLPEALRKLLHGHLGTWL 361 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| nAChRbeta3 | NP_525098.1 | LIC | 39..437 | CDD:273305 | 71/361 (20%) |
| Neur_chan_LBD | 52..247 | CDD:280998 | 45/239 (19%) | ||
| Neur_chan_memb | 255..434 | CDD:280999 | 24/109 (22%) | ||
| lgc-14 | NP_510024.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 36/199 (18%) |
| LGIC_TM | 259..349 | CDD:365787 | 23/113 (20%) | ||
| TM1 helix | 259..284 | CDD:349850 | 5/27 (19%) | ||
| TM2 helix | 292..313 | CDD:349850 | 7/26 (27%) | ||
| TM3 helix | 323..345 | CDD:349850 | 5/26 (19%) |
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| Isobase | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 1 | 0.910 | - | - | ||
| RoundUp | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 2 | 1.810 | |||||