DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and lgc-14

DIOPT Version :10

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_510024.2 Gene:lgc-14 / 187972 WormBaseID:WBGene00011355 Length:400 Species:Caenorhabditis elegans


Alignment Length:361 Identity:71/361 - (19%)
Similarity:144/361 - (39%) Gaps:89/361 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 VKALDRLHAGLFTNYDSDVQPVFQ------------GTPTNVSLEMVVTYIDIDELN---GKLTT 97
            :::...|...||..||..|.||:.            ..|...:..:::..:.:.|:|   .|:..
 Worm    31 IESQTNLTRDLFNGYDPTVSPVYSKIDPLQPLGYDPDAPKRYNYSIMLYSLKLVEVNEPAEKVAV 95

  Fly    98 HCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQ------VTLSHD 156
            ...:...|.|....|..|.||:|.....:.|.||:|.::.|..||   :.:.:      |.::.:
 Worm    96 VMEIMEYWYDIRLSWNASLYDDIDTFYTRQSNVWSPTLSAFGADE---LVDLRDPDFRMVCVNSN 157

  Fly   157 GHFRWMPPAVYTAYCELNMLNWPHDKQSCKLK------------------IGSWGLKVVLPENGT 203
            |:.........::.|.:|:..:|.|.|:|::|                  :|     |::.:...
 Worm   158 GYIYDYISVRVSSSCPMNVYKFPFDYQTCQIKFCLPIFNSVEIQIFNEIYVG-----VLMSDLWE 217

  Fly   204 ARGESLDHDDLVQSPEWEI--VDSRAHFVS-QDYYGYME---YTLTAQRRSSMYTAVIYTPASCI 262
            ..|.|          ||::  :.:|...:. .|.:|.::   :.:|.:|....|..:|..|:..|
 Worm   218 TMGNS----------EWKLTNLSNRVETLQYNDGFGNLDLGIFEITIKRNPLYYIYMIIFPSFII 272

  Fly   263 VILALSAFWLPPHMGGEKI-MIN-GLLIIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSV 325
            .::::...:|   .|.:|: .:| ||..|:...|      :|.|:::..|     .:.::..|.|
 Worm   273 NVVSIIGVFL---KGADKMSRLNVGLTNIMTMTF------ILGVMADKIP-----RTGTIPMLGV 323

  Fly   326 STIVEVLVLYLATGKHKRRLPEALRKLLHGHLGTWL 361
            ..||.:.::.:|.|     :...:.:|.|     ||
 Worm   324 YIIVNLAIMIIAIG-----IVTMITELRH-----WL 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:455710 71/361 (20%)
lgc-14NP_510024.2 LGIC_ECD_cation 75..257 CDD:349790 36/199 (18%)
Cys-loop 172..186 CDD:349790 5/13 (38%)
LGIC_TM 259..349 CDD:476813 23/113 (20%)
TM1 helix 263..284 CDD:349850 4/23 (17%)
TM2 helix 292..313 CDD:349850 7/26 (27%)
TM3 helix 323..345 CDD:349850 5/26 (19%)

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