Sequence 1: | NP_525098.1 | Gene: | nAChRbeta3 / 33228 | FlyBaseID: | FBgn0031261 | Length: | 441 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510023.2 | Gene: | lgc-13 / 187971 | WormBaseID: | WBGene00011354 | Length: | 399 | Species: | Caenorhabditis elegans |
Alignment Length: | 328 | Identity: | 74/328 - (22%) |
---|---|---|---|
Similarity: | 147/328 - (44%) | Gaps: | 59/328 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 48 VKALDRLHAGLFTNYDSDVQPVFQGTPT--------------NVSLEMV-VTYIDIDELNGKLTT 97
Fly 98 HCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQITLFNGDEGGLMAETQVTLSHDGHFR-- 160
Fly 161 ----------WMPPAVYTAYCELNMLNWPHDKQSCKLK----IGSWGLKVVLPENGTARGESLDH 211
Fly 212 DDLVQ---SPEWEIVD--SRAHFVSQDYYGYME---YTLTAQRRSSMYTAVIYTPASCIVILALS 268
Fly 269 AFWLPPHMGGEKI-MIN-GLLIIVIAAFLM-YFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVE 330
Fly 331 VLV 333 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta3 | NP_525098.1 | LIC | 39..437 | CDD:273305 | 74/328 (23%) |
Neur_chan_LBD | 52..247 | CDD:280998 | 52/233 (22%) | ||
Neur_chan_memb | 255..434 | CDD:280999 | 19/82 (23%) | ||
lgc-13 | NP_510023.2 | LGIC_ECD_cation | 74..257 | CDD:349790 | 41/195 (21%) |
LGIC_TM | 259..>335 | CDD:365787 | 18/79 (23%) | ||
TM1 helix | 259..284 | CDD:349850 | 4/27 (15%) | ||
TM2 helix | 292..313 | CDD:349850 | 5/20 (25%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |