DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and lgc-12

DIOPT Version :10

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_498656.3 Gene:lgc-12 / 187855 WormBaseID:WBGene00020048 Length:428 Species:Caenorhabditis elegans


Alignment Length:432 Identity:94/432 - (21%)
Similarity:163/432 - (37%) Gaps:103/432 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 LFTNYDSDVQPV--FQGTPTNVSLEMVVTYIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYDNI 120
            |..:|....:||  :....|...:..:...::::|.|.::....|....|:|:..||.|.::|.|
 Worm    36 LMKDYYQFTRPVKNYSSMLTVTIMPQIYNLVEVNEQNEQIKLLIWFPQSWKDDYLVWDPDEWDGI 100

  Fly   121 TQITLKSSEVWTPQITLFNG-DEGGLMAETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQS 184
            .:||:..|.||.|...:||. :|...:....|.:.::|........:....|.:::|::|.|.|.
 Worm   101 EKITIPKSMVWLPDGYIFNTVEETDTLDNHNVRVHYNGKVEVDFNKLIDLICPMSVLSFPFDVQL 165

  Fly   185 CKLKIGSWGLKVVLPENGTARGESLDHDDLVQS-------PEWEIVDSRA--------HFVSQD- 233
            |.|:.|||          |.:..:|..:.|..|       .||:||...|        :.:..| 
 Worm   166 CALQFGSW----------TYQSHALSFNVLEASVNENNKNSEWDIVAFNATKKVSKYMNLIGGDN 220

  Fly   234 YYGYMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGG---EKIMINGLLIIVIAAFL 295
            .|..:.|.|..:|:...|..||..|...||.::....:.|..:.|   |.:.:....::.:|..|
 Worm   221 VYEEIFYFLEVRRKPLYYIVVILIPTFLIVTVSNIGLFTPHGVHGDREEHVSLGLTTMLTMAVIL 285

  Fly   296 MYFAQLLPVLSNNTPL----VVIFYSTSLLYLSVSTIV---EVLVLYLAT----------GKHKR 343
            ......:|..|...||    |:|.::.|::.:.||.::   ...:||:..          .|||.
 Worm   286 DMVTGQMPKSSEGIPLLGMYVLIEFALSIMAVLVSVLIIFAHERMLYMDAMPPFWIFRLFSKHKN 350

  Fly   344 RLPEALRKLLHGHLGTWLLLSVFSTTGESQAEKTKEMDEHPYEEADEQESSPLGI---------- 398
            ::|.|                              ||      |.|:..|||:.:          
 Worm   351 QIPLA------------------------------EM------EYDDLRSSPVDLAQELRFCIEK 379

  Fly   399 --NHTEVPGAK-ANQFDWALLATAVDRIS-----FVSFSLAF 432
              .|.|...:| .|:..|....:..|.|.     ||:..:.|
 Worm   380 VRKHLEDLDSKDKNELIWQRFFSCADIICGSCFFFVNCIITF 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:455710 94/432 (22%)
lgc-12NP_498656.3 LIC 29..>327 CDD:455710 70/300 (23%)

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