Sequence 1: | NP_525098.1 | Gene: | nAChRbeta3 / 33228 | FlyBaseID: | FBgn0031261 | Length: | 441 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_501411.4 | Gene: | lgc-5 / 184620 | WormBaseID: | WBGene00017543 | Length: | 433 | Species: | Caenorhabditis elegans |
Alignment Length: | 472 | Identity: | 104/472 - (22%) |
---|---|---|---|
Similarity: | 178/472 - (37%) | Gaps: | 99/472 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 19 LLQMLMGMLLMGLTSVPGATATADPKNANVKALDRLHAGLFT-NYDSDVQPVFQGTPTNVSL-EM 81
Fly 82 VVTYIDIDELNGKLTTHCWLNLRWRDEERVWQPSQYD-NITQITLKSSEVWTPQITLFNG----- 140
Fly 141 ---DEGGLMAETQVTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCKLKIGSW---------- 192
Fly 193 -GLKVVLPENGTARGESLDHDDLVQSPEWEIVDSRAHFV-SQDY-----YGYMEYTLTAQRRSSM 250
Fly 251 YTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAA---FLMYFAQLLPVLSNNTPLV 312
Fly 313 VIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHLGT-------WL-LLSVFSTT 369
Fly 370 GESQAEKTKEMDEHPYEEADEQESSPLGINHT--------------EVPGAKANQFDWALLATAV 420
Fly 421 DRISFVSFSLAFLILAI 437 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta3 | NP_525098.1 | LIC | 39..437 | CDD:273305 | 98/450 (22%) |
Neur_chan_LBD | 52..247 | CDD:280998 | 60/222 (27%) | ||
Neur_chan_memb | 255..434 | CDD:280999 | 32/203 (16%) | ||
lgc-5 | NP_501411.4 | LGIC_ECD_cation | 51..235 | CDD:349790 | 52/198 (26%) |
LGIC_TM | 238..>323 | CDD:365787 | 16/85 (19%) | ||
TM1 helix | 238..261 | CDD:349850 | 4/22 (18%) | ||
TM2 helix | 273..294 | CDD:349850 | 4/20 (20%) | ||
TM3 helix | 304..323 | CDD:349850 | 2/18 (11%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |