DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and lgc-9

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_500341.1 Gene:lgc-9 / 182195 WormBaseID:WBGene00015412 Length:464 Species:Caenorhabditis elegans


Alignment Length:429 Identity:86/429 - (20%)
Similarity:168/429 - (39%) Gaps:79/429 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 YDSDVQPVFQGT-PTNVSLEMVVTYIDIDELNGKLTTHCWLNL-RWRDEERVWQPSQYDNITQIT 124
            ||..|:|..:.. |..|.:.:|:..:.....|.::.:....:: :|||.:..|.|:.:..:||:.
 Worm    52 YDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLAWNPADHSGLTQVV 116

  Fly   125 LKSSEVWTPQITLFNG-DEGGLMAETQ--VTLSHDGHFRWMPPAVYTAYCELNMLNWPHDKQSCK 186
            :..|.||.|::.::|. |...::.:.:  |.:.|.||.:...|...:..|.:|:..:|.|.|.|.
 Worm   117 MPRSLVWVPKLFIYNSMDTKDMLTDDRYDVRIQHTGHVKVNSPQFVSTLCRINIDLFPFDTQFCA 181

  Fly   187 LKIGSWGLKVVLPENGTARGESLDHDDLVQSP---------EWEIVD---SRAHFVSQ-DYYGYM 238
            :.:.|..|.|          |.:| .:..|.|         ||::::   .:..|:.: :|...:
 Worm   182 IALASPLLSV----------EEMD-VNATQPPVDSYFSGNAEWQVMNVTVKQMKFMEEGEYRAEV 235

  Fly   239 EYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGG---EKIMINGLLIIVIAAFLMYFAQ 300
            .|.|...||.:.|..||..|...|..|::...:.|....|   ||:.:....::.:...|...|.
 Worm   236 HYILHLNRRPTYYITVIVVPTFLISALSILGIFSPGSNDGPRNEKVSLGLGSLLAMTVLLDIVAG 300

  Fly   301 LLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLPEALRKLLHGHLGTWLLLSV 365
            .:| .|:..||:..:....:|..::...|.:.:|.::      |......|:...|....|.|:|
 Worm   301 AMP-KSDAIPLLGYYIMLVILLCAIGVAVSMAMLSMS------RSCIQTSKMPPPHYYRLLFLNV 358

  Fly   366 FSTTGESQAEKTKEMDEHP--------------------------YEEADEQESSPLGINHTEVP 404
            .....::.......|:|.|                          |.|..|::.....:      
 Worm   359 CRVVKQNSGLNGVAMNEKPTAITPRFPDLIAIYNQLIEVARAQRTYRERIEKQKWQHRV------ 417

  Fly   405 GAKANQFDWALLATAVD---RISFVSFSLAFLILAIRCS 440
                 :.:|..:...:|   ...|..|::..|:|.:||:
 Worm   418 -----EIEWNKIFARIDFFFLFLFEMFNVLILVLFLRCA 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 84/424 (20%)
Neur_chan_LBD 52..247 CDD:280998 45/202 (22%)
Neur_chan_memb 255..434 CDD:280999 33/210 (16%)
lgc-9NP_500341.1 Neur_chan_LBD 42..245 CDD:280998 46/203 (23%)
Neur_chan_memb 252..>347 CDD:280999 19/101 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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