DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta3 and lgc-21

DIOPT Version :9

Sequence 1:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_510341.2 Gene:lgc-21 / 181516 WormBaseID:WBGene00007903 Length:462 Species:Caenorhabditis elegans


Alignment Length:458 Identity:84/458 - (18%)
Similarity:158/458 - (34%) Gaps:142/458 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 SVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYIDIDELNGKLTT 97
            ::|.|.|:..|                 ||.|. |||     |....:..:.:.:::|....::.
 Worm    95 NIPHAIASIPP-----------------NYLSQ-QPV-----TINFAQFTLQHFELNEHLKDISI 136

  Fly    98 HCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQI-------TLFNGD-----------EGG 144
            |.:|.|.|.|:..:|....:.....:......:|.|.:       .|.|||           :|.
 Worm   137 HGYLELSWHDDRLMWNQDTWKKNKLVVHSFHHIWVPLLGSQNPENHLKNGDAFEIRKVETTNQGN 201

  Fly   145 LMAETQVTLSHDGHFRWMPPAVYTAYC-ELNMLNWPHDKQSC-----------KLKIGSWGLKVV 197
            :.|:...:|              ..:| :.:..|:|:|...|           .::..|.||.:.
 Worm   202 VSAKVAFSL--------------RTFCDDTDFENYPNDVYKCCFSFEPQQDREVIQFTSSGLPIF 252

  Fly   198 L-PEN---------GTARGESLDHDDLVQSPEWEIVDSRAHFVSQDYYGYMEYTLTAQRRSSMYT 252
            . |:|         ||......|..::.|                     :.:.|..:|..|...
 Worm   253 TDPKNFRDYGWGVSGTVPESFDDPSEIAQ---------------------LGFCLNLKRAHSSLK 296

  Fly   253 AVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAF---LMYFAQLLPVLSN--NTPLV 312
            ..:..|    :.:..:.|.|||..|..||.|...:.::...|   |::..::.|.||:  :||..
 Worm   297 IELAIP----LFITTALFLLPPLFGSVKIQIYLKMFVMGLQFMTLLIFSTRIAPFLSSTASTPKP 357

  Fly   313 VIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLP-----EALRKLLHGHLGTWLLLSVFSTTGES 372
            :.|...:|::..:|....:::  ....:.||.||     ......::|.||      |.:.:|  
 Worm   358 MRFLEIALVFNLISITTSIII--FCCMQVKRTLPPWGRVTQFANFINGFLG------VLNISG-- 412

  Fly   373 QAEKTKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLATAVDRISFVSFS-LAFLILA 436
                   ::|:..::.|||.|.            .:.|.|||.:..|...:...:.| :...:..
 Worm   413 -------VEEYNLDKYDEQVSQ------------NSYQKDWANVFRAAHAVLMGTISAIVIFVYI 458

  Fly   437 IRC 439
            :.|
 Worm   459 VYC 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 81/448 (18%)
Neur_chan_LBD 52..247 CDD:280998 38/234 (16%)
Neur_chan_memb 255..434 CDD:280999 39/189 (21%)
lgc-21NP_510341.2 LGIC_ECD 113..290 CDD:355788 33/216 (15%)
Cys-loop 214..229 CDD:349787 4/14 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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