Sequence 1: | NP_525098.1 | Gene: | nAChRbeta3 / 33228 | FlyBaseID: | FBgn0031261 | Length: | 441 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510341.2 | Gene: | lgc-21 / 181516 | WormBaseID: | WBGene00007903 | Length: | 462 | Species: | Caenorhabditis elegans |
Alignment Length: | 458 | Identity: | 84/458 - (18%) |
---|---|---|---|
Similarity: | 158/458 - (34%) | Gaps: | 142/458 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 33 SVPGATATADPKNANVKALDRLHAGLFTNYDSDVQPVFQGTPTNVSLEMVVTYIDIDELNGKLTT 97
Fly 98 HCWLNLRWRDEERVWQPSQYDNITQITLKSSEVWTPQI-------TLFNGD-----------EGG 144
Fly 145 LMAETQVTLSHDGHFRWMPPAVYTAYC-ELNMLNWPHDKQSC-----------KLKIGSWGLKVV 197
Fly 198 L-PEN---------GTARGESLDHDDLVQSPEWEIVDSRAHFVSQDYYGYMEYTLTAQRRSSMYT 252
Fly 253 AVIYTPASCIVILALSAFWLPPHMGGEKIMINGLLIIVIAAF---LMYFAQLLPVLSN--NTPLV 312
Fly 313 VIFYSTSLLYLSVSTIVEVLVLYLATGKHKRRLP-----EALRKLLHGHLGTWLLLSVFSTTGES 372
Fly 373 QAEKTKEMDEHPYEEADEQESSPLGINHTEVPGAKANQFDWALLATAVDRISFVSFS-LAFLILA 436
Fly 437 IRC 439 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta3 | NP_525098.1 | LIC | 39..437 | CDD:273305 | 81/448 (18%) |
Neur_chan_LBD | 52..247 | CDD:280998 | 38/234 (16%) | ||
Neur_chan_memb | 255..434 | CDD:280999 | 39/189 (21%) | ||
lgc-21 | NP_510341.2 | LGIC_ECD | 113..290 | CDD:355788 | 33/216 (15%) |
Cys-loop | 214..229 | CDD:349787 | 4/14 (29%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |